Detail information of GWHGAAEX003635/evm.TU.scaffold_139.47
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427716717|ref|YP_007064711.1| | 3.00E-43 | thioredoxin [Calothrix sp. PCC 7507] |
| KOG | KOG0910 | 6.00E-59 | Thioredoxin-like protein |
| nr | gi|743764472|ref|XP_010912443.1| | 3.84E-76 | PREDICTED: thioredoxin Y, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|Q5JMR9|TRXY_ORYSJ | 1.00E-62 | Thioredoxin Y, chloroplastic (Precursor) |
| trEMBL | tr|M0TA68|M0TA68_MUSAM | 4.00E-68 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P25720_001} |
| TAIR | AT1G76760 | 6.00E-59 | thioredoxin Y1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 1037499 | 1056252 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003635
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 63 | 161 | 4.40E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0006662 | Biological Process | glycerol ether metabolic process |
| GO:0015035 | Molecular Function | protein disulfide oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.800 |
| SRR2545915 | Juvenile tuber | 7.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.490 |
| SRR5643514 | five period of Gastrodia elata | 16.080 | |
| SRR5643515 | five period of Gastrodia elata | 17.540 | |
| SRR5643524 | five period of Gastrodia elata | 18.470 | |
| SRR5643525 | five period of Gastrodia elata | 15.040 | |
| SRR5643528 | five period of Gastrodia elata | 12.980 | |
| SRR5643658 | five period of Gastrodia elata | 9.990 | |
| SRR5643659 | five period of Gastrodia elata | 21.760 | |
| SRR5643660 | five period of Gastrodia elata | 18.760 | |
| SRR5643661 | five period of Gastrodia elata | 19.070 | |
| SRR5643662 | five period of Gastrodia elata | 18.910 | |
| SRR5643663 | five period of Gastrodia elata | 18.120 | |
| SRR5643664 | five period of Gastrodia elata | 17.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.480 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.820 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.420 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.94 |
| Juven | Juvenile tuber | 22.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.14 | |
| Mother_Juven | Mother tuber of Juvenile | 13.64 |