Gene detail

Detail information of GWHGAAEX003639/evm.TU.scaffold_139.51

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672116512\|ref\|XP_008781423.1\|	0	PREDICTED: uncharacterized protein LOC103701216 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0TB72\|M0TB72_MUSAM	1.00E-138	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29270_001}
trEMBL	tr\|M0TB72\|M0TB72_MUSAM	2.00E-29	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29270_001}
TAIR	AT5G09840	1.00E-103	Putative endonuclease or glycosyl hydrolase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	1069485	1084727	+

Transcript Sequence
>GWHTAAEX003639 GCGACGATAAGCTACGGGACATCCATTGTCTCCTCCTTATGAAAAGCATACTGAAGCTCTCCTCGCCCTTTTCCTTCTCTCACATTCACCCTAATCTTCTCCGCTCTCATCTTCTCCTCTTGATCGGCTCCGCCGCAGGCGAGGACGTTTATGGATGTTCCCGCTTTTCCTCTTATTCTTCTTCATTTTCTTCTCCGTGCGCCTCGTCTCCGTCGAGGAGGAACTATGACGAGGAGAATAGGAGCGTGAAGGTCACGGTATGGTGGGATTTTGAGAACTGCAACATTCCTGTAGGCGTGAACGTCCATCGCGTGGCCAGTCGGATCACCTGGGCCGTTCGATCAAGCAGCATCAAGGGCCCTGTTACCATCACGGCGTTTGGGGACGTCGCCCAGCTCTCGCGTGCTACTCAGGAAGCGCTCACATTCACTGGAATTTGCCTCACGCATGTTCCTAATAGTGGGAAGAATAGTTCTGACAGATCTTTTATGGCTGACGTTGTCTACTGGGTTTATCAGAACCCTCCGCCTGCGCATTTCTTCTTGATATCTGGCGATAAGGACTTTGCCAACATTCTTCATAGGTTAAGGATGAGCAACTACAATATACTTCTTTCTACCACAGAAACTGCTTCTGGGGTCCTTTGCAGTGCTGCAACTATAATGTGGCCCTGGAATGAGTTGGTTAGGGGAGAAAATGCTATTGTCAGGCATTTTAACTATCCACCTGATGGACTGTCTGGTTCTTGGTATGGTCATTATAAAGGGGCACTTGATGACCCATTTGCATTTACTGACCATCCTACAACTTCACAGGCTGATGAATCGATGGAGCTAATTTCTGAGATGAAGCCACGTCCAGTTCCAAGGACAGTGGTGAATGGGATTCGCCAGGTTTTACATTCCTATCCTGAAGGCATCAGCCTTACGGAGCTTCGAAGTGAGCTTAAAAAAAGCAATATAACTATCGATAAGGACTTTTTCGGTCACAAAAATTTCTCTAACCTTCTTGCATCATTGAACCTTTTGAAGTATATACTGACCCCTTCTGGTGATCGGCAGCCTCTGGCAGTTGGCACTCTAAAAAAGGGAATGGAACAGCCTGAAATTAGTCTAAGGTTCATTAAAGATGTTAATGCTAGTGCTTCTACTTTGTCCAAGGTAGACAACAAAAAGTTAAATGCTAATGCAAGCGCTTATACATTTTCCAAGGGAGATAACAGCAATTTAGATATTAATGCAAGTGTTTCTGCTTTTACGAAGGGAGACAACAACAATTTAGATGCTAATGCAAGTGATTCTGCTTTGTCCAAGGGTGATCATTCAGTGGTTGCTTTAGAAGGTTGTGAAGGTGGTTCTTCTATACATTCATCAAAAGATGATTCTGATACTTCCCAACATACGGGTAGCATAATTCTTAACGAAGGCCTCCTGAAGAGGCTACGGAAGATTCTGTCTCGTGATAGAGTTGATTCTGTTCTCAAAAAAGAAGATAATATTTTGCCAGCAGACTTCTTGAAGCATGAGGACCCGAGTAAATTTGCAGCAGGCATGCGATCTTCAGAGCATGCTAAACAAGTGCAACCCAAGAATAATTCTGTGGATTCAAATAATATTGTTTTACAGAAAGAAAATGCTGGCATAGGACTGGATGCAGATAAACCAATCACAAAGGATAATGACACTTTTTTATATGAGAACTTCAATTATGCAGATGAACAGAAGGTTGGCCTTTTTGGGAGAATTATGAGGCGGCTAAAGCCTTGGATATATGGTTCCGATGAGCATAATCACCATTCTGACTCTTGCGATGACGCTCATCGAGCTGATGCAGCTGGCGGATCTGATAAAGCTCTTCCTGTGTCAAGTGGACCTCCAACAACTCATGAGCTATTCTCAAAATCCCACTTTTGGAATGAATTAGAGTCATTTTTAACGAGTCCCATTGGCTGTCAGCTTATCCTGAAATCTAGAACTCGGGAGCAGCTGCTGCGAAGACTGCAGAACGAAGGCCCTGCCTCTCTCAGAGGTCTTGGCGACCGCGATCTGTCCAACTTTGGCGATATTCTGCTTTCGGAGAAGAAATGGGTGGAAGTATCGCATTCTTCCAAGTTTCCTTTCAGACTCGTCATCACTTCCAAGATAGAACAGTCCATCCCTTCGCACCAACCATCTCCTTCAAAGGGATTAGGATTAATAAGTTCGCTTTTTCCTGTGACAATGAAACCCAGCCCACAGGAAGAGCAATCTCACAGAGCTCCGCACAATCTCACTGAGCTCCGTCCGTGGTTCCAGAGAGCATTCGGCGGCGCCGTTCGGATCAAACCTGAGGAATTTCTTAAGGTTTTCGAGAGCGAGTTCTGCACGAAGCTCAGCAGCACTTCTTACGGATATCCGAACGTCCGAAGCCTGGTTGCGGCGTGTTCGAAGGCTGGCAGAGAAGGAATAATTGCAGACTGCTGCGAGTTGCTGAAGGAGCTCTTGGAGAAGAATCCTGCGGGATTCAACGCCAGCATCTTCCAGCCTGAGTTTGTTCGGAAATACAGCTATATATTAAATTATCAGTCTCTCGGGTACTCGAAGCTCGTCTCAATGCTGCAGATAATGCCCGGAATAAGAATCGAAAACTCGTACATCCTGCCATCTGGCGGTGCGAAGGAAGATTTGGGGGACGGCGAGTCGTCGGGATCAGAAAACGGGTTCTCTGAAGACTCCGTGTGGGAAGAGCTAGGGCCTTTATCCAACAGCTCCGTGCCCCAAAAGGGTGGGGAGTACAGCCCTGTTTCCCTTTCGTCGGACGACGAGTACACCGATCCGGACGACGAAGACGTCCCTCCGTCGCCGACGATTCGAACAGAAAGCTGCCGGAAAGGATCGGAGGACGCTTCCGCCCTGCTGAAGATTCTGAACTCGTGGAGCGGTGGTAATGTAGGTGGGAAGGATCGGATTGGAAATGGAGATCAGAAGCTGAGGGCTACTGGTTTGAGAAGGCATCATTCTTTCGTGAAGGTTGAGAAGCAATGTTTGCAGAGAGAATTTTGAGTGAGGTGAAGGGGGCCGGAGATTTGAAGCTCAGATGGTGAAGTTTGTGCTGATTTCTGCGAACTGCATTCAGCCATCTATAAATTATTTTTAACTATCTATAAATTAATTAAGCTATTTTAATTGTTATCAGTGAATGAGATTAAGGCGGTATTTCTTTTTTAATAAAATTGAAGCTATTATTTAAATTTCTATTACGTGTTATAAAACATTTCACATTATGACATATATTAAGCTTTTATCGAAGGTTTTCGGAGAAATATATTACAG

Network for GWHGAAEX003639

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01936.17	NYN	71	206	3.20E-25
PF12872.6	OST-HTH	278	329	1.60E-05
PF12872.6	OST-HTH	809	862	2.90E-05

Protein Sequence

>GWHPAAEX003639
MKSILKLSSPFSFSHIHPNLLRSHLLLLIGSAAGEDVYGCSRFSSYSSSFSSPCASSPSRRNYDEENRSVKVTVWWDFENCNIPVGVNVHRVASRITWAVRSSSIKGPVTITAFGDVAQLSRATQEALTFTGICLTHVPNSGKNSSDRSFMADVVYWVYQNPPPAHFFLISGDKDFANILHRLRMSNYNILLSTTETASGVLCSAATIMWPWNELVRGENAIVRHFNYPPDGLSGSWYGHYKGALDDPFAFTDHPTTSQADESMELISEMKPRPVPRTVVNGIRQVLHSYPEGISLTELRSELKKSNITIDKDFFGHKNFSNLLASLNLLKYILTPSGDRQPLAVGTLKKGMEQPEISLRFIKDVNASASTLSKVDNKKLNANASAYTFSKGDNSNLDINASVSAFTKGDNNNLDANASDSALSKGDHSVVALEGCEGGSSIHSSKDDSDTSQHTGSIILNEGLLKRLRKILSRDRVDSVLKKEDNILPADFLKHEDPSKFAAGMRSSEHAKQVQPKNNSVDSNNIVLQKENAGIGLDADKPITKDNDTFLYENFNYADEQKVGLFGRIMRRLKPWIYGSDEHNHHSDSCDDAHRADAAGGSDKALPVSSGPPTTHELFSKSHFWNELESFLTSPIGCQLILKSRTREQLLRRLQNEGPASLRGLGDRDLSNFGDILLSEKKWVEVSHSSKFPFRLVITSKIEQSIPSHQPSPSKGLGLISSLFPVTMKPSPQEEQSHRAPHNLTELRPWFQRAFGGAVRIKPEEFLKVFESEFCTKLSSTSYGYPNVRSLVAACSKAGREGIIADCCELLKELLEKNPAGFNASIFQPEFVRKYSYILNYQSLGYSKLVSMLQIMPGIRIENSYILPSGGAKEDLGDGESSGSENGFSEDSVWEELGPLSNSSVPQKGGEYSPVSLSSDDEYTDPDDEDVPPSPTIRTESCRKGSEDASALLKILNSWSGGNVGGKDRIGNGDQKLRATGLRRHHSFVKVEKQCLQREF

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.640
SRP064423	SRR2545915	Juvenile tuber	5.280
SRP108465	SRR5643513	five period of Gastrodia elata	9.950
	SRR5643514	five period of Gastrodia elata	9.960
	SRR5643515	five period of Gastrodia elata	8.820
	SRR5643524	five period of Gastrodia elata	9.700
	SRR5643525	five period of Gastrodia elata	8.070
	SRR5643528	five period of Gastrodia elata	8.200
	SRR5643658	five period of Gastrodia elata	5.430
	SRR5643659	five period of Gastrodia elata	11.800
	SRR5643660	five period of Gastrodia elata	11.290
	SRR5643661	five period of Gastrodia elata	9.390
	SRR5643662	five period of Gastrodia elata	10.660
	SRR5643663	five period of Gastrodia elata	11.640
	SRR5643664	five period of Gastrodia elata	10.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.820
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.280
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.470
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.680
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.800
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.800
SRP279888	Gastro	Gastrodia elata tuber	7.68
	Juven	Juvenile tuber	9.22
	Mother_Gastro	Mother tuber of Gastrodia elata	4.14
	Mother_Juven	Mother tuber of Juvenile	7.34