Detail information of GWHGAAEX003641/evm.TU.scaffold_139.53


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672116925|ref|XP_008781636.1|0PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Phoenix dactylifera]
Swissprottr|Q689D6|RPD1_ARATH3.00E-25Protein ROOT PRIMORDIUM DEFECTIVE 1
trEMBLtr|M0T809|M0T809_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P18110_001}
TAIRAT2G312901.00E-149Ubiquitin carboxyl-terminal hydrolase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013510882201093922+
Transcript Sequence

Network for GWHGAAEX003641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11955.7PORR373512.90E-94
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.290
SRR2545915Juvenile tuber10.270
SRP108465SRR5643513five period of Gastrodia elata16.600
SRR5643514five period of Gastrodia elata12.640
SRR5643515five period of Gastrodia elata13.670
SRR5643524five period of Gastrodia elata13.750
SRR5643525five period of Gastrodia elata23.450
SRR5643528five period of Gastrodia elata18.740
SRR5643658five period of Gastrodia elata16.200
SRR5643659five period of Gastrodia elata19.120
SRR5643660five period of Gastrodia elata20.760
SRR5643661five period of Gastrodia elata19.330
SRR5643662five period of Gastrodia elata23.950
SRR5643663five period of Gastrodia elata19.550
SRR5643664five period of Gastrodia elata15.840
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.810
SRR6049655Rhizomagastrodiae_C368-T10_good_115.860
SRR6049656Rhizomagastrodiae_C368-T07_good_116.920
SRR6049657Rhizomagastrodiae_C368-T07_good_115.350
SRR6049658Rhizomagastrodiae_C368-T04_good_115.230
SRR6049659Rhizomagastrodiae_C368-T04_good_118.250
SRR6049660Rhizomagastrodiae_C368-T01_good_114.830
SRR6049661Rhizomagastrodiae_C368-T04_good_115.930
SRR6049662Rhizomagastrodiae_C368-T01_good_116.270
SRR6049663Rhizomagastrodiae_C368-T01_good_116.210
SRR6049664Rhizomagastrodiae_C368-T10_good_118.510
SRR6049665Rhizomagastrodiae_C368-T10_good_118.510
SRP279888GastroGastrodia elata tuber 15.56
JuvenJuvenile tuber15.14
Mother_GastroMother tuber of Gastrodia elata 28.10
Mother_JuvenMother tuber of Juvenile 22.12