Gene detail

Detail information of GWHGAAEX003642/evm.TU.scaffold_139.54

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743764395\|ref\|XP_010912402.1\|	1.95E-109	PREDICTED: transcription factor VIP1-like [Elaeis guineensis]
Swissprot	tr\|Q9MA75\|VIP1_ARATH	4.00E-65	Transcription factor VIP1
trEMBL	tr\|B4FWJ9\|B4FWJ9_MAIZE	2.00E-97	Uncharacterized protein {ECO:0000313\|EMBL:ACF86492.1, ECO:0000313\|EnsemblPlants:GRMZM2G079365_P01}
TAIR	AT1G43700	2.00E-59	VIRE2-interacting protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	1096591	1104723	+

Transcript Sequence
>GWHTAAEX003642 TTCTTAATTATGTCACTATTATCAAAAATGAGCATGTGAGGGAGAATCTTTCCCGTTTCGTGTACATAACAAAGTCAAGTATTCGGCCGCGGCAACTGGTGGGACTGAGCTGAGATCGATGGACTCAAAGCGGCCGATCGAGAGCAACCGGCGCTTCGCCGGCGATCAGATTCCTCCGCACCCTCGGAACTCTGGCCACCGTAGAGCCCATTCCGAAACCTTCTTTCGCCTTCCCGATGAGCTCCTCTTCGAGTCCGATCCAGACTTCAACTTTTCAGACATCGACTTCCCCTCTCTGTCAGATGACAACATCTCCGGCAGCAGCATTCCCGCCGATTCAGGCACTTCTGACCAGACTTCGATGCTTCGGCCCTCTTCTGGCGGAGCTCATTCGAGAAGTCTGTCGTTGGATGCCGCGTGCTTCGAGGGGTTAGGGTTTCAGGGCCCTGTGGCCATTCGCGGTTCCGCTCCAGAAATGAGGCCGCATCATAGGCACAGCAGCTCTATGGACGGGGCGACGTCCCCCTTTGAAGGCGAGTCGATGCCGCCGTCTTCTGATTTTTCGAAAAAGGCGGTGCCCGCCGACGATAAGCTCGCCGAGCTTGCTCTCATCGATCCCAAGAGAGCCAAGAGAATTCTGGCGAACAGGCAGTCTGCTGCTCGATCCAAGGAGCGAAAGATACGCTATACAAGTGAATTGGAGAGGAAGGTGCAGACGCTTCAGACAGAGGCAACAACTCTTTCGGCTCAGCTTACCCTGCTGCAGAGGGATTCCACCGGCTTATCTTCTGAGAATAGAGAACTTAAATTGAGGCTGCAGGCTATGGAACAGCAGGCTAATCTCAGTGATGCTTTGAACGAGGCATTGAGAGATGAGGTTCAACGGCTCAAGATAGCAATTTCGCCGTCCCCAACCATCAACCGGATGGCCTTCGGCGGCAGGAGATTTCAACCGTCATCGTTCTCCTCTCCCTCTCACCAGGCTCACCTCGGCGGGCGCTTGAATCAGCAGCGAATTGGCTTGGCTCTGCCCCCCGCTTCTACCTCGAATGGCCAATCATATAACGAGCATCATGTGCAGGATTCTATGGACCTGATGTAGTTGGCCTATTAAGATCATGAAGAGAATGCTGCTCAGGTGAGTCTGAACCAATTTTACAAGTCAAAATGTGAGTAGTGATCATGCTAAAAGAGTAAAATACCCCTTGCATATATTGATGACTTGTAGTTCAATCTTTGTATTGAAGTGTTAGTTTTAAAAAATGTGTTGAGCATATGGCTTCAATACTTATAGAAAAAGAATCAAGTTTTTCTGTCGTAAGTCTTAACACTGCTTATCATATATATAATGTCTATTTGTTTTAAGATTAGTCATACTTACGCTTAATTAGTTAATTTTAATGAGTTTTTAAGTTGTATGATTGCTACAAAAGATTAGAAAAAATAAATTTAATTCAAGATGGG

Network for GWHGAAEX003642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00170.20	bZIP_1	168	226	4.20E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	pathway	mapID
K20557	VIP1	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.700
SRP064423	SRR2545915	Juvenile tuber	53.180
SRP108465	SRR5643513	five period of Gastrodia elata	58.030
	SRR5643514	five period of Gastrodia elata	37.590
	SRR5643515	five period of Gastrodia elata	54.990
	SRR5643524	five period of Gastrodia elata	49.130
	SRR5643525	five period of Gastrodia elata	39.940
	SRR5643528	five period of Gastrodia elata	40.700
	SRR5643658	five period of Gastrodia elata	30.950
	SRR5643659	five period of Gastrodia elata	63.730
	SRR5643660	five period of Gastrodia elata	71.310
	SRR5643661	five period of Gastrodia elata	75.270
	SRR5643662	five period of Gastrodia elata	57.630
	SRR5643663	five period of Gastrodia elata	61.810
	SRR5643664	five period of Gastrodia elata	56.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.330
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	36.320
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	38.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.700
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.700
SRP279888	Gastro	Gastrodia elata tuber	40.99
	Juven	Juvenile tuber	75.23
	Mother_Gastro	Mother tuber of Gastrodia elata	52.58
	Mother_Juven	Mother tuber of Juvenile	63.33