Detail information of GWHGAAEX003643/evm.TU.scaffold_139.55


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743763551|ref|XP_010911964.1|1.89E-167PREDICTED: SKP1-interacting partner 15-like [Elaeis guineensis]
Swissprottr|O49279|SKI15_ARATH1.00E-124SKP1-interacting partner 15
trEMBLtr|F2D5S9|F2D5S9_HORVD9.00E-136Predicted protein {ECO:0000313|EMBL:BAJ90450.1} (Fragment)
TAIRAT1G769204.00E-124F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013511081811128434+
Transcript Sequence

Network for GWHGAAEX003643

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box14545.80E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms12.320
SRR2545915Juvenile tuber19.320
SRP108465SRR5643513five period of Gastrodia elata24.180
SRR5643514five period of Gastrodia elata22.770
SRR5643515five period of Gastrodia elata22.750
SRR5643524five period of Gastrodia elata23.100
SRR5643525five period of Gastrodia elata17.370
SRR5643528five period of Gastrodia elata15.390
SRR5643658five period of Gastrodia elata17.910
SRR5643659five period of Gastrodia elata18.780
SRR5643660five period of Gastrodia elata17.160
SRR5643661five period of Gastrodia elata18.530
SRR5643662five period of Gastrodia elata22.490
SRR5643663five period of Gastrodia elata20.280
SRR5643664five period of Gastrodia elata24.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.100
SRR6049655Rhizomagastrodiae_C368-T10_good_135.300
SRR6049656Rhizomagastrodiae_C368-T07_good_123.050
SRR6049657Rhizomagastrodiae_C368-T07_good_124.260
SRR6049658Rhizomagastrodiae_C368-T04_good_128.220
SRR6049659Rhizomagastrodiae_C368-T04_good_134.890
SRR6049660Rhizomagastrodiae_C368-T01_good_126.220
SRR6049661Rhizomagastrodiae_C368-T04_good_129.940
SRR6049662Rhizomagastrodiae_C368-T01_good_120.180
SRR6049663Rhizomagastrodiae_C368-T01_good_125.140
SRR6049664Rhizomagastrodiae_C368-T10_good_120.620
SRR6049665Rhizomagastrodiae_C368-T10_good_120.620
SRP279888GastroGastrodia elata tuber 23.89
JuvenJuvenile tuber103.16
Mother_GastroMother tuber of Gastrodia elata 36.26
Mother_JuvenMother tuber of Juvenile 50.00