Detail information of GWHGAAEX003648/evm.TU.scaffold_139.60


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189502234|ref|YP_001957951.1|2.00E-09hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2]
nrgi|672159898|ref|XP_008799715.1|2.14E-144PREDICTED: E3 ubiquitin-protein ligase PUB22-like [Phoenix dactylifera]
Swissprottr|Q84TG3|PUB23_ARATH1.00E-115E3 ubiquitin-protein ligase PUB23
trEMBLtr|K4ASR6|K4ASR6_SOLLC5.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc01g007000.2.1}
TAIRAT2G359304.00E-115plant U-box 23

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013511577461159015+
Transcript Sequence

Network for GWHGAAEX003648

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04564.14U-box6792.30E-18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.770
SRR2545915Juvenile tuber0.580
SRP108465SRR5643513five period of Gastrodia elata2.270
SRR5643514five period of Gastrodia elata1.400
SRR5643515five period of Gastrodia elata3.990
SRR5643524five period of Gastrodia elata1.270
SRR5643525five period of Gastrodia elata0.130
SRR5643528five period of Gastrodia elata0.810
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata1.150
SRR5643660five period of Gastrodia elata1.430
SRR5643661five period of Gastrodia elata1.210
SRR5643662five period of Gastrodia elata0.480
SRR5643663five period of Gastrodia elata0.270
SRR5643664five period of Gastrodia elata0.170
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.830
SRR6049655Rhizomagastrodiae_C368-T10_good_110.790
SRR6049656Rhizomagastrodiae_C368-T07_good_13.620
SRR6049657Rhizomagastrodiae_C368-T07_good_13.700
SRR6049658Rhizomagastrodiae_C368-T04_good_18.600
SRR6049659Rhizomagastrodiae_C368-T04_good_17.070
SRR6049660Rhizomagastrodiae_C368-T01_good_16.060
SRR6049661Rhizomagastrodiae_C368-T04_good_15.150
SRR6049662Rhizomagastrodiae_C368-T01_good_13.180
SRR6049663Rhizomagastrodiae_C368-T01_good_18.550
SRR6049664Rhizomagastrodiae_C368-T10_good_114.560
SRR6049665Rhizomagastrodiae_C368-T10_good_114.560
SRP279888GastroGastrodia elata tuber 0.10
JuvenJuvenile tuber0.30
Mother_GastroMother tuber of Gastrodia elata 65.45
Mother_JuvenMother tuber of Juvenile 56.40