Gene detail

Detail information of GWHGAAEX003657/evm.TU.scaffold_139.70

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|32471805\|ref\|NP_864799.1\|	4.00E-11	small conductance mechanosensitive ion channel [Rhodopirellula baltica SH 1]
KOG	KOG4629	0	Predicted mechanosensitive ion channel
nr	gi\|743773618\|ref\|XP_010917159.1\|	0	PREDICTED: LOW QUALITY PROTEIN: mechanosensitive ion channel protein 10-like [Elaeis guineensis]
Swissprot	tr\|Q9LYG9\|MSL10_ARATH	0	Mechanosensitive ion channel protein 10
trEMBL	tr\|F6HGU0\|F6HGU0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51416.1}
TAIR	AT5G12080	0	mechanosensitive channel of small conductance-like 10

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	1265694	1270933	+

Transcript Sequence
>GWHTAAEX003657 CAATCGTATGCCTTCCTACCCTTTTCATCCACTTAGACAGCGACTGAACGACGCTGCGTTCGCATTGTGGAAAAGCTAGGGTTTCTACCAAGCCCGATTCTCTTCCGTAAAAGATAAGATCATACTCTTTGATGACGGATATTTCATCACGTACCATTACTAGAGCTATGTGAAGCTGAAACATCCTTCATTTGTCTCAAAAATTTGTTACCGGAAGTTTTGTTTTCGAAGCAGCAAATGCTCATCTTCACGGAGCTAGTTCTTGTCATTTATTAGTTTTTTTTAATGTTTGGAGACTCAATGGATTCCGATAAAGGATCAGCTGTGAAGAAAGCTGAGGAGGTAGTTTTGGTAATCCCAGTGCCAGTAGAGGCAGCAGAAGCAGAAATTTATAGTTCAAACCAGGATATTGAATTGGTGCAGGAAACTCATAATGCAGCATCCAAGACATGTTCGGACAGCTCAAAATCTGTTGGAGTGAGCCCGAAAAAGCCCCCTCGACCTCCACAGTCCGAAGCCATCATCCGCCGGCGCTCCATTTCCAAGCCCAAATCAAGGTTTGAAGAGCCTCTCAGTTCCAATGATAGCTTCCATGTTTTGGCTCTTGATTGTCCCTCGGGGGGATCACCATTTAAGGAATCGCCAGCCCCAAAAGCTTCTGGAACTCCAAAGACACCTCGATCCAACGTTGATGAAGAGGAAGAGGAAGAGGATGAAGAAGTGTACAAGAAGGAGCTGCTCCGAGAAAGCAGTAAAAGGCAGAGCAAGGGGAAAAATTGGCTTCTGATTGAGTGGCTGATGCTAGTCTTGGCTACAGCCTGCTTGATTACAAGCTTGCTCGTTCCTAGATTGCAAGGATTTGTGATTTGGGGTCTGGAGATCTGGAAGTGGTGCGTTATGGTGATGGTCATTTTCTGCGGTCAGCTTATGAGCTGCTGGTTTATCACTGCCATTGTCTTCTTAATTGAGATAAACTTCCTTTTCAGAAAGAAGGTTCTGTACTTTGTCTATGGGCTTCAGAAAAGTGTTCGGGCGTGTGTTTGGTTAGGACTGGTTCTGCTCTCTTGGTCACTCATTTTCAATGACAATGTTGTACTAAGATCACCAAAAGTCTCAAAAGCTCTCAATTATGTGACCAGAGCATTGGCTTCACTCTTGATAGGCTCTGTTATTTGGCTAGCAAAAACCCTTTTGGTCAAAATATTAGCTTCGTCATTCCACATGAGCAGATTCTTCGATAGGATTCAAGAGACTCTCTATCATCAGTATCTACTACAAACTCTTTCAGGGCTTCCAGTGATGGAAATAGCAGAGAAAGTTGGTCCTTCTAAGAGTGCAGCTCAGTTCAACTTTATGAGCGATAGAAACAAGGGGAAAGGAAATGGGGAGCAGTTGGAGATGATTGACATTGCTAAACCTCATCGCTTGAGCCATGAGAAAGTATCAGCTTGGACCATGAAGGGTCTTGTGAAAGCTATTAGAAGCTCTGGCCTTTCAACAATTTCAAATAAGATTGATGAGAGCTTTGATGAGGACTTGAGTGAGCAGAAAGACACGGAGATAACTAATGAGGGAGAAGCTAGGGCTGCAGCTTATCAGATTTTTAAGAATGTTGCAAAACCAGGCTACAAGTACATTGAAGTGGAAGAGCTAATGAGATTCTTAAGCAAGGAGGAGATCACATATGCACTTCCACTATTTGAAGGAGCTTTAGTGACTGGGAAGATCAAGAAATCTGCACTGAGGAATTGGGTGGTGAAAGCCTACCTTGAACGCAAGTCGCTCGCACATTCCTTGAATGACACCAAAACTGCTGTCAAACAACTGCACAAGCTATTGAGTTGTATAGTTATTGTTCTTATCATAATCATCACTCTCCTAATGATGGGTTTTGCCACAACAAAAGTGCTGCTTTTCATCTCTTCTCAACTTCTTCTGGTTGGTTTCATATTTACAAATAGCTGCAAGACTGCTTTTGAATCAATCATATTTGTGTTTGTGATGCATCCTTTTGATGTTGGCGACCGTTGCATTATCGATGGTGTTCAGATGATTGTAGAAGAGATGAACCTATTGACCACTGTTTTTCTTCAATCTGACAACACAAAAATCTACTACCCGAATTCAGTCTTGGCGACAAAACCGATAAGAAATTTCTATCGAAGCCCAAACATGGGTGATTCTGTGGAGTTCTCTGTTGATATCTCTACTTCCATGGAGCAGATTGCTGATCTGAAGGCTAGGATTAAAGCGTACATTGAGACTAAGCCAAGCCACTGGCATCAGAACCACAGTATTGTTGTGAAGGACATTGTGAATGCTAATAAGATGAGCATGGCCCTCTATGTGACACACACCATGAATTATCAGAATATCGCCGAGAAGAATAATCGGCGGACTGATCTCATTTTCGAGTTGAAGAAGATCTTTGAGGGGCTCTCGGTTCGATACACTCTCCCACCTCAAGAGGTTCATCTCAGTTGCGCCGGACAATATCCCCTTCTAGTGGCTCTCTCAAGTCCAAGCTAACAATCTAGGTATGCATTGTTTTATTGTCTTTTGTGCCTCTTATTGGGCAATGATATAGTTTCATAAGAAAATGTAGAATAGGTTTGTGTAAATATGCTCAAGGTTTTAGTTTTTCATTTATATGTTCCGTTTTATAAAAAATAATTATTATTTTTGTGAATGTTGTTGTAATTTAGTGGTTAATGCTCTCTGAATTTATTATTCTATATAATGGATTTAAATT

Network for GWHGAAEX003657

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00924.17	MS_channel	516	716	8.80E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.430
SRP064423	SRR2545915	Juvenile tuber	1.920
SRP108465	SRR5643513	five period of Gastrodia elata	1.720
	SRR5643514	five period of Gastrodia elata	1.940
	SRR5643515	five period of Gastrodia elata	1.760
	SRR5643524	five period of Gastrodia elata	1.840
	SRR5643525	five period of Gastrodia elata	0.840
	SRR5643528	five period of Gastrodia elata	0.890
	SRR5643658	five period of Gastrodia elata	3.300
	SRR5643659	five period of Gastrodia elata	0.860
	SRR5643660	five period of Gastrodia elata	0.370
	SRR5643661	five period of Gastrodia elata	0.700
	SRR5643662	five period of Gastrodia elata	0.320
	SRR5643663	five period of Gastrodia elata	0.420
	SRR5643664	five period of Gastrodia elata	0.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.360
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.130
SRP279888	Gastro	Gastrodia elata tuber	1.69
	Juven	Juvenile tuber	0.42
	Mother_Gastro	Mother tuber of Gastrodia elata	0.74
	Mother_Juven	Mother tuber of Juvenile	0.11