Detail information of GWHGAAEX003658/evm.TU.scaffold_139.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|57641471|ref|YP_183949.1| | 1.00E-10 | 30S ribosomal protein S3 [Thermococcus kodakarensis KOD1] |
| KOG | KOG2829 | 5.00E-119 | E2F-like protein |
| nr | gi|672190033|ref|XP_008775137.1| | 2.02E-152 | PREDICTED: transcription factor-like protein DPB [Phoenix dactylifera] |
| Swissprot | tr|Q9FNY2|DPB_ARATH | 9.00E-128 | Transcription factor-like protein DPB |
| trEMBL | tr|W9QN12|W9QN12_9ROSA | 1.00E-149 | Transcription factor-like protein DPB {ECO:0000313|EMBL:EXB29164.1} |
| TAIR | AT5G03410_2 | 5.00E-119 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 1273936 | 1292960 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003658
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07650.16 | KH_2 | 20 | 90 | 7.20E-10 |
| PF02319.19 | E2F_TDP | 134 | 215 | 2.30E-25 |
| PF08781.9 | DP | 223 | 330 | 4.70E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04683 | TFDP1 | TGF-beta signaling pathway | map04350 |
| Cell cycle | map04110 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005667 | Cellular Component | transcription factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.610 |
| SRR2545915 | Juvenile tuber | 34.030 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.400 |
| SRR5643514 | five period of Gastrodia elata | 34.910 | |
| SRR5643515 | five period of Gastrodia elata | 27.360 | |
| SRR5643524 | five period of Gastrodia elata | 35.280 | |
| SRR5643525 | five period of Gastrodia elata | 32.420 | |
| SRR5643528 | five period of Gastrodia elata | 26.460 | |
| SRR5643658 | five period of Gastrodia elata | 25.270 | |
| SRR5643659 | five period of Gastrodia elata | 25.870 | |
| SRR5643660 | five period of Gastrodia elata | 26.880 | |
| SRR5643661 | five period of Gastrodia elata | 25.360 | |
| SRR5643662 | five period of Gastrodia elata | 29.810 | |
| SRR5643663 | five period of Gastrodia elata | 28.520 | |
| SRR5643664 | five period of Gastrodia elata | 31.140 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.810 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.53 |
| Juven | Juvenile tuber | 51.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 60.39 | |
| Mother_Juven | Mother tuber of Juvenile | 44.86 |