Detail information of GWHGAAEX003659/evm.TU.scaffold_139.73


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|407461730|ref|YP_006773047.1|3.00E-09like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus koreensis AR1]
KOGKOG17802.00E-43Small Nuclear ribonucleoprotein G
nrgi|743847730|ref|XP_010939175.1|1.48E-43PREDICTED: probable small nuclear ribonucleoprotein G [Elaeis guineensis]
Swissprottr|O82221|RUXG_ARATH7.00E-44Probable small nuclear ribonucleoprotein G
trEMBLtr|M0UB70|M0UB70_MUSAM2.00E-43Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP21620_001}
TAIRAT2G239302.00E-43probable small nuclear ribonucleoprotein G

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013512956941307873+
Transcript Sequence

Network for GWHGAAEX003659

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM9723.50E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11099SNRPG, SMG Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000387Biological Processspliceosomal snRNP assembly
GO:0005681Cellular Componentspliceosomal complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms114.290
SRR2545915Juvenile tuber138.730
SRP108465SRR5643513five period of Gastrodia elata144.910
SRR5643514five period of Gastrodia elata184.300
SRR5643515five period of Gastrodia elata158.090
SRR5643524five period of Gastrodia elata172.460
SRR5643525five period of Gastrodia elata149.800
SRR5643528five period of Gastrodia elata131.880
SRR5643658five period of Gastrodia elata128.560
SRR5643659five period of Gastrodia elata176.430
SRR5643660five period of Gastrodia elata165.340
SRR5643661five period of Gastrodia elata176.930
SRR5643662five period of Gastrodia elata169.130
SRR5643663five period of Gastrodia elata176.330
SRR5643664five period of Gastrodia elata163.710
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_189.890
SRR6049655Rhizomagastrodiae_C368-T10_good_151.030
SRR6049656Rhizomagastrodiae_C368-T07_good_193.580
SRR6049657Rhizomagastrodiae_C368-T07_good_186.540
SRR6049658Rhizomagastrodiae_C368-T04_good_192.310
SRR6049659Rhizomagastrodiae_C368-T04_good_181.110
SRR6049660Rhizomagastrodiae_C368-T01_good_181.110
SRR6049661Rhizomagastrodiae_C368-T04_good_189.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1103.190
SRR6049663Rhizomagastrodiae_C368-T01_good_187.830
SRR6049664Rhizomagastrodiae_C368-T10_good_1117.500
SRR6049665Rhizomagastrodiae_C368-T10_good_1117.500
SRP279888GastroGastrodia elata tuber 222.71
JuvenJuvenile tuber186.87
Mother_GastroMother tuber of Gastrodia elata 166.01
Mother_JuvenMother tuber of Juvenile 179.81