Gene detail

Detail information of GWHGAAEX003662/evm.TU.scaffold_139.78

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0314	0	Predicted E3 ubiquitin ligase
nr	gi\|743774764\|ref\|XP_010917745.1\|	0	PREDICTED: uncharacterized protein LOC105042299 [Elaeis guineensis]
Swissprot	tr\|P93471\|COP1_PEA	3.00E-08	E3 ubiquitin-protein ligase COP1
trEMBL	tr\|M0TL54\|M0TL54_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P27180_001}
TAIR	AT5G47430	0	DWNN domain, a CCHC-type zinc finger

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	1365498	1379872	+

Transcript Sequence
>GWHTAAEX003662 CGAAAACGCTTGCCACTCACACATTATAATGCGATGCGTGTCGTGCTATAAATTACTTTTGCCGAGAGAGTTCCCGCATGCGTATCAAGTGCTGCCCTATTCCTCCGTGAAGGAAGTCGGCTGTTGCCTTTTTCACCTTCTTCTGCGTAAGGCTGTCTGAAAAAACCCTAACCCTGTTTCTCTCTGCCTCTCTCATCCACGCGGTTTTCATCGATTTGATGCATCTGTTCGTCTTCCGTTGGTTTGCTAGAGGATCGGGTTAGAGCACCCTGGGAAATCAAATTGGAGATCTTAATCGCGAGAGCCAGATCCTGTCTTCGTTCGATTGCTGATTTGTCAGATCCGGTGGCGTTTTGGAGCACTAGTTCCTTCGTATAATTCGATACCAGCACGTGGTATCCGGTCGCGGAGGTGGCGAGTTTTTGAGCTGCGAAGGTTTCCGATCTGGCCAACCAAGGAGATTTACTTTTGGTCTGAGGGGTTTCATGTCGTCTTCTCCATCGCATCCAGACCTGTCCTCCTGGATGCTGTTCTGATCTGAGGATTCTGCCGGCGGTTGCTGTTTTCGGTCTCTGGTTTATTCTTTATTTGAGAAAGAGATTGGCTGACAAGCTGCTTAGAGCCTTGCGATTGTTGGCTGTGATTTTTGAAAAATAGCTTGAGGCCTACGACAGAAAAGAATAGGAGAACTATTTATTTTGTATTCGAGTTTGTGTTTTTGTTGTTTTTGCAAATTAACAGGCCTTTACAATTTTTTTGGCCTTTTACTTGCTTTTCAAATCATTTTGAGGAATTCTTGTCCTTTTTGTTTGATCGTTTTGCTCTTAGTTAAGGAAAATAACTCCTTGAAAAGAATATGGCTGTGTACTACAAGTTTAAAAGTGCAAAAGATTATGATTCTATTCCCATTGAGGGACAATTCATATCTGTTGCAAATCTGAAAGAAAGAATTTTTGAATCCAAGCATTTGGGAAGGGGTACTGATTTCGATCTGATGGTTTCGAATGCCCAAACCGATGAAGAATATGTAGATGAAGCTGGGATGATTCCTAAAAACACTTCAGTACTGATACGCCGGGTACCAGGGCGCCCTCGAAAACCTATTGTTACAGAGAGAACCGAGCCTAAAATTGTAGAGGATAAATTAGAAGATATTCTACCTTCTAGTAGCATGGTGGCTGGGGATTCATCTTCCGTGATATATCCTGAAGAATTTGAATGGGATGAGTTTGGGAATGACTTATACAGCATTCCTGAGGTTCATCATCGCGCTCAGCCAATTATTCCAATTGTTGATGTAACTCCTGCAGACAAAGCTGATGAAGACAGCAAGATTAGAGCTTTGGTTGATACTCCCGCACTTGATTGGAATCGCCAAGGTCATGATTCTTATGGTGCTGGTAGAGGATTTGGTAGAGGAATGGGTGGAAGAATGATGGCTGGTCGTGGTTTCGGCCGAGTTGGGTTGGAGAAGAAGACGCCTCCTGCAGGTTACATCTGCCATAGGTGCAAAATAGCAGGTCATTTTATCCAGCATTGCCCCACAAATGGCGATCCCAATTATGACATAAGAAGGGTGAAACCTCCCACTGGGATTCCAAGGTCTATGCTAATGGCAAATCCAGATGGTTCTTATGCATTGCCCAGTGGTGCAGTTGCTGTCTTGAAGCCCAACGAAGCTGCATTTGAGAGAGAAATTGAGGGGTTACCTTCTACTCGATCTATAAGCGATCTTCCACCCGAGTTGCACTGCCCATTATGCAAAGAAGTGATGAAGGATGCTGTGTTAACAAGCAAATGTTGCTTCAAGAGTTTTTGTGACAAGTGCATTCGTAACTACATCATAAACAACTCAAAGTGCGTCTGTGGGGCAATGAATGTACTAGCTGATGACCTTCTTCCAAATAAAACTCTTAGGGACACCATCAGCCGCATATTGGAGACTACTACTAGCAGCACAGAGAATGCTGGAAGCTTAGCACACGTGCAAGACATGGAATCTGCTCGCTACGGTCAACCAAGAGTTCCATCACCTACTCTTTCTAATGCATCTAAGTGTGAACCCAAGCTCCTTCCTCCTGCTCTAACTGCTGAGGCAGCAGCCAAGCAGCCTTCTCCAGATATCAAGGAATGTGAAGGAGCTACTGAAGCAAAGGCTGATTATAATGTCCCAACTCAGCTTTTCGATAAGAAACTGGATAAAACCATGGATTCTGCTCTAACAACACCTGATTCAACAAACGCAAGAGTGGTTGCTAACACAGAAGAGACTCTGGAAAAGCTGCCTCTCGGCGAGCAAGGAAAGAAAAAGAAAAAGAAGAAAACTCGCATTGTTGCTGCTGGTACTGACATGCAATGGAGGGGCTTTCAAGATTTTGGGGTTGAGAACTTTGCAGGAATGCCTGTGGGGCCATCAGCTTACAATCCCTATTGGTCAAATGGGATGCCAATTGGGATTGAGGGATTCATGCCATCGATAGCTGCTGCCCCAATGCCTTACATTGGCTATGCACCCAGTCACTTCGATGTTGCTTTTGGGGGAATCATACCTCACGACCCATTTGCAGCAGCTCAGGGATACATGATACCAGCTTTTCCTCAAAGGGATCTAGCTGAGCTGGGCATGAATGGATTTGGCATGAATCAAGGTCCTCCTCTTGTCAGCCGAGAGGAGTTTGATGCCAGAAAAGCTGAGATGAGGAGAAAGCGCGAAATGGACCGAACAGAGAGACTCAGTGAAAGGGATCAGAAGCCCAGGGAAAGAGAGAAAGTGCCTTCTGGAAAGGATGCTGCCGGCGTTTGCATCTTCGACGCTCCTCCTCCCTCGCTCAACAAGCCTAGATTGAGGTCTGAGGCGGCCAACGTTGACCGGCTGGACCGGGAGCGGGAAGACAGACCGGATCGATCGGCCAACACGGACCGGCACGGCGGTTCGAAGCGGAGGTCGTCGGACCGCGAGCGCGAAAGCGACGGGGCGGAGCGGAAGCAGAAAGGGAGCGTGTTTTCTCGCATCAGCTTTCCGGTTGATGGCGGCAAGCGGAAGAAATCCTCGCCGTCTGATCCGGCCAACGGACGGCGGAACTGCGAATCGAGCGACGATGAGCGGCACTTCAAGCGGAGGTCTTCGTCGAGGCGGGAAGAAGAGAGGGATGAAGAAGGCGCCTCCTCCTCTTCCCGTGTTTCTAGGGCTTCGAGGGAGCCCAAGCGGAGGTTATGACATCGCTTGAGATTAATGGCACGTGTAATCAATCAGTCAATCAATCTTCCGTGAGTTTATCGGGACGCTTCTTTTTTTTCTTTTTTTTTTTCGGGTTTTATATTCTGATTTTAGGTTTTACTTTTGATCATTTGTAAAATAAAGTTAGAATTTTATATTTGCAATGAAATTGGTTGATGCGTTGCTCCGGATTTGCTTTTCTATTTCTGAAAGGCTAATTTTATTGTTTTAAATATAAATAAATAAAATATAATTCTTTTT

Network for GWHGAAEX003662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08783.10	DWNN	3	76	1.30E-30
PF13696.5	zf-CCHC_2	210	230	1.70E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.530
SRP064423	SRR2545915	Juvenile tuber	44.660
SRP108465	SRR5643513	five period of Gastrodia elata	48.280
	SRR5643514	five period of Gastrodia elata	41.570
	SRR5643515	five period of Gastrodia elata	48.240
	SRR5643524	five period of Gastrodia elata	39.900
	SRR5643525	five period of Gastrodia elata	51.770
	SRR5643528	five period of Gastrodia elata	40.690
	SRR5643658	five period of Gastrodia elata	42.560
	SRR5643659	five period of Gastrodia elata	45.590
	SRR5643660	five period of Gastrodia elata	48.920
	SRR5643661	five period of Gastrodia elata	42.380
	SRR5643662	five period of Gastrodia elata	42.110
	SRR5643663	five period of Gastrodia elata	43.060
	SRR5643664	five period of Gastrodia elata	51.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	53.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	67.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	66.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.910
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	43.580
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.670
SRP279888	Gastro	Gastrodia elata tuber	79.02
	Juven	Juvenile tuber	84.67
	Mother_Gastro	Mother tuber of Gastrodia elata	108.24
	Mother_Juven	Mother tuber of Juvenile	104.91