Detail information of GWHGAAEX003663/evm.TU.scaffold_139.79
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|385805542|ref|YP_005841940.1| | 4.00E-16 | 50S ribosomal protein L15 [Fervidicoccus fontis Kam940] |
| KOG | KOG1742 | 1.00E-85 | 60s ribosomal protein L15/L27 |
| nr | gi|743773744|ref|XP_010917226.1| | 1.12E-93 | PREDICTED: 60S ribosomal protein L27a-3-like [Elaeis guineensis] |
| Swissprot | tr|P49637|R27A3_ARATH | 4.00E-86 | 60S ribosomal protein L27a-3 |
| trEMBL | tr|K4C8P4|K4C8P4_SOLLC | 8.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc06g071720.1.1} |
| TAIR | AT1G70600 | 1.00E-85 | Ribosomal protein L18e/L15 superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 1389202 | 1390304 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003663
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00828.18 | Ribosomal_L27A | 28 | 146 | 8.70E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02900 | RP-L27Ae, RPL27A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.040 |
| SRR2545915 | Juvenile tuber | 87.320 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 246.580 |
| SRR5643514 | five period of Gastrodia elata | 286.790 | |
| SRR5643515 | five period of Gastrodia elata | 243.550 | |
| SRR5643524 | five period of Gastrodia elata | 253.570 | |
| SRR5643525 | five period of Gastrodia elata | 164.110 | |
| SRR5643528 | five period of Gastrodia elata | 191.500 | |
| SRR5643658 | five period of Gastrodia elata | 148.420 | |
| SRR5643659 | five period of Gastrodia elata | 294.550 | |
| SRR5643660 | five period of Gastrodia elata | 263.820 | |
| SRR5643661 | five period of Gastrodia elata | 318.090 | |
| SRR5643662 | five period of Gastrodia elata | 287.140 | |
| SRR5643663 | five period of Gastrodia elata | 241.130 | |
| SRR5643664 | five period of Gastrodia elata | 273.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 257.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 360.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 301.050 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 220.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 217.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 168.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 255.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 233.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 350.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 329.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 388.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 388.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 264.27 |
| Juven | Juvenile tuber | 222.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 110.29 | |
| Mother_Juven | Mother tuber of Juvenile | 86.13 |