Detail information of GWHGAAEX003670/evm.TU.scaffold_139.88


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|3.00E-07ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04241.00E-104Ubiquitin-protein ligase
nrgi|672120382|ref|XP_008783454.1|2.41E-110PREDICTED: SUMO-conjugating enzyme SCE1-like [Phoenix dactylifera]
Swissprottr|Q42551|SCE1_ARATH3.00E-105SUMO-conjugating enzyme SCE1
trEMBLtr|K4AG29|K4AG29_SETIT1.00E-110Uncharacterized protein {ECO:0000313|EnsemblPlants:Si037836m}
TAIRAT3G578701.00E-104sumo conjugation enzyme 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013516128221624712-
Transcript Sequence

Network for GWHGAAEX003670

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con91511.30E-44
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10577UBE2I, UBC9 RNA transport map03013
Ubiquitin mediated proteolysismap04120
NF-kappa B signaling pathwaymap04064

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms108.160
SRR2545915Juvenile tuber87.970
SRP108465SRR5643513five period of Gastrodia elata116.520
SRR5643514five period of Gastrodia elata126.230
SRR5643515five period of Gastrodia elata103.090
SRR5643524five period of Gastrodia elata127.470
SRR5643525five period of Gastrodia elata166.680
SRR5643528five period of Gastrodia elata195.230
SRR5643658five period of Gastrodia elata197.550
SRR5643659five period of Gastrodia elata96.750
SRR5643660five period of Gastrodia elata112.120
SRR5643661five period of Gastrodia elata101.960
SRR5643662five period of Gastrodia elata76.230
SRR5643663five period of Gastrodia elata68.700
SRR5643664five period of Gastrodia elata82.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1131.900
SRR6049655Rhizomagastrodiae_C368-T10_good_1177.230
SRR6049656Rhizomagastrodiae_C368-T07_good_1142.310
SRR6049657Rhizomagastrodiae_C368-T07_good_1172.130
SRR6049658Rhizomagastrodiae_C368-T04_good_1211.320
SRR6049659Rhizomagastrodiae_C368-T04_good_1233.890
SRR6049660Rhizomagastrodiae_C368-T01_good_1177.200
SRR6049661Rhizomagastrodiae_C368-T04_good_1177.550
SRR6049662Rhizomagastrodiae_C368-T01_good_1159.000
SRR6049663Rhizomagastrodiae_C368-T01_good_1177.930
SRR6049664Rhizomagastrodiae_C368-T10_good_1159.060
SRR6049665Rhizomagastrodiae_C368-T10_good_1159.060
SRP279888GastroGastrodia elata tuber 105.87
JuvenJuvenile tuber80.54
Mother_GastroMother tuber of Gastrodia elata 129.55
Mother_JuvenMother tuber of Juvenile 57.22