Detail information of GWHGAAEX003672/evm.TU.scaffold_139.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 8.00E-62 | MADS box transcription factor |
| nr | gi|482514620|gb|AGK07583.1| | 3.77E-96 | SOC1 [Dendrobium hybrid cultivar] |
| Swissprot | tr|Q9XJ60|MAD50_ORYSJ | 6.00E-71 | MADS-box transcription factor 50 |
| trEMBL | tr|M9XL26|M9XL26_9ASPA | 1.00E-96 | SOC1 {ECO:0000313|EMBL:AGK07583.1} |
| TAIR | AT2G45660 | 8.00E-62 | AGAMOUS-like 20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 1653598 | 1678628 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003672
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 4.50E-26 |
| PF01486.16 | K-box | 82 | 170 | 2.40E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.080 |
| SRR2545915 | Juvenile tuber | 16.410 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.870 |
| SRR5643514 | five period of Gastrodia elata | 8.750 | |
| SRR5643515 | five period of Gastrodia elata | 9.890 | |
| SRR5643524 | five period of Gastrodia elata | 11.520 | |
| SRR5643525 | five period of Gastrodia elata | 13.230 | |
| SRR5643528 | five period of Gastrodia elata | 17.200 | |
| SRR5643658 | five period of Gastrodia elata | 23.410 | |
| SRR5643659 | five period of Gastrodia elata | 15.600 | |
| SRR5643660 | five period of Gastrodia elata | 15.280 | |
| SRR5643661 | five period of Gastrodia elata | 10.780 | |
| SRR5643662 | five period of Gastrodia elata | 7.840 | |
| SRR5643663 | five period of Gastrodia elata | 12.430 | |
| SRR5643664 | five period of Gastrodia elata | 8.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.210 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.650 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.650 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.50 |
| Juven | Juvenile tuber | 11.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.54 | |
| Mother_Juven | Mother tuber of Juvenile | 48.07 |