Gene detail

Detail information of GWHGAAEX003674/evm.TU.scaffold_139.92

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	8.00E-124	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|695005335\|ref\|XP_009389115.1\|	1.94E-163	PREDICTED: trihelix transcription factor GTL1-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q39117\|TGT2_ARATH	1.00E-122	Trihelix transcription factor GT-2
trEMBL	tr\|M0RP32\|M0RP32_MUSAM	1.00E-165	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P03520_001}
TAIR	AT1G76880	8.00E-124	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	1699535	1703087	-

Transcript Sequence
>GWHTAAEX003674 GTTAGAACATCTAGAAATTCTCAAAGAGTTTTGACACAGAACGAAAATAAGATCAAAGTTATCTCCATCACATGAAATTTTCTATATGCAAGAATGATATTGCAACCTATTAACAAATCTCTCCTTTTCATATTGATAAATACCTAAATTTTTTTATTTGTTTAATAAGATATTAAGCATTTCTTATATATAATTAAATTTCAAATAAAAAGCAAATATGTGATCAGCATAATCTGATATATGAGTACAAATTCAGAACCTTAACTACTCTATGATTTAATATGTATTATTTGCCAGAGCAATCACTTTTAAGGACTACTTCCACACTCTCTCTCTCATCCATCTTTTTCACCCTCTTGAGTATCCTTCTCCTTTTCCATTTTCCATTCCCTCCAATCAAATCTCCCCTCCCCGCAAAGTTTAGTAGTGATAGCATGCAGCAGCAAGGGGGGTCCCACCACGGGGCGCCTCCGCCGGAAACGTCCCTGTCGTTTGCTCCGGCGGAGGCCGCTTCGCCCCTCAGCAGCCGCCCCGCTCCGCGCCCGCCGGCCTCCGTCTTCGACGAATACGGACCGGGCGAGGAGGGCGGCGGGCCCGCTAACCGCTGGCCGAGGCAGGAGACCCTCTCCCTTCTCAAGATCCGCTCCGAGATGGACCCCGCCTTCCGCGACGCAACCCTCAAGGGCCCTCTCTGGGAGGACGTCTCCAGGAAGCTGGCCGAGCTGGGCTACACAAGAAGCGCTAAGAAGTGCAAAGAGAAATTCGAAAACGTTCACAAGTACTACAAGAGAACGAAGGAAGGCCGCGCGGGCCGCCAGGACGGCAAAAGCTACAGATTTTTCAGCCAACTCGAAGCGCTGCACTCGCCTTCCGCCGCCGCAGCGGCGGCGGCGGCTTTAATCCCGACTTCGCTTCTGGCAATTCAACCGCCGAGTGCTACGACCCCCGCGCTGCCGCCCGTCGATTCCCTGCCTGGCGGAATCAGCTTCTCTTCGAGCACGTCATCCTCTTCCTCCTCGGATTCCGACGGGGAGGAGACCGAGGAAGGGGGGATCTGCCCACCACCTCACGAAGGCCAAAGGAAGAGGAAACGCCGCAACGCCTATCTAAAAATGATGGATTTCTTCGACAGGTTGATGAAACAGATGATGGATCGCCAAGAAGCAATGCAGAATCGCTTTTTGGAGACCATCGAGAAGCGAGAGCAGGACAGGTTGATTCGAGAAGAGGCTTGGAAGAGGCAGGAGATGGTCAGGCTTAACCGCGAGCACGAACTCATGGCTCAAGAGCGCGCCATTGCTGCGAGCAGAGATGCCGCCGTCATTTCCTTCCTGCAAAAATTCGCCGATAACCCCCCGCCGCCTCGTCCCACCGCAACTGAAGCAGCGCCGCCGTCTCCCGAAAAAAAGACGGAAATAGGTGAGCCGGCTGCCGTTGCCAGCCAGCCCTGCTCATCTTCAGAGCCGGCAATCTCGCCGTCGTCCTCGCCGTCCCGATGGCCGAAGCCTGAGGTTCTCGCCTTGATCCGGATGCGAAGCGGGCTGGAAACAAGGTACCTTGAGGCGGGCCCAAAGGGGCCGCTCTGGGAGGAGATTTCGCTCGGGATGAAACGCCTCGGGTACAACCGGAACGCAAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTATTTCAAAAAGGTGAAGGAGGGCAACAAGAAGCGGCCTGAGGACGCCAAAACCTGCCCTTATTTCCACGAGCTTGACGCCTTGTACCGTAAGAAGCATACTGTTGTGACCGGGGATCCTCTCCGAACTCCGGCCATAGCTGGAATCGAAGACCAAAGGCAAAATAATCAAGCAAGCATGAGAATCGGCGACAGCATAAGCCACGAGCCCGGCGAAGCTCAATTGCCGAGAAGCAACGGTGGTGGCGCTCCTCAGCTCTTCTTTGGAGGAGCCTCACCAATGAAGAAGCCAGAAGACATTGTTAGAGAACTAATGGGACAGCAGATTCCGCAAAGCCGGCCCGCAACGGCCGCCAGGGACTACGAAAAACTCGGCGGCGGCGAGACAGTGGACAGTGACATGGGCAATCACGAATACGAAGACGACGAAGATTACGACGACAACCAAGGCGACGTCAAGCTTCAGTACGAGATACAGTTCCAGTCAAAAGGCGCCGGACCGGTGCCCGGTGGAGGGGCCCGCAGCGGCAGCGCGGCGACGGCGGCATCCTCCGCCGGATCTTTTCTCGCCATGGTTCAATAGCATGGCCGTCGTTCAAGTCTTTTCTCTCTTCCTTGCGAATGCATATCATTCTATCATCAAAATTTGGGCTTTAGAGTCTCTATAGATATGTTTTTTTTTTTTTTTTTTTT

Network for GWHGAAEX003674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	107	193	1.20E-20
PF13837.5	Myb_DNA-bind_4	404	491	5.20E-21

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.120
SRP064423	SRR2545915	Juvenile tuber	14.630
SRP108465	SRR5643513	five period of Gastrodia elata	24.150
	SRR5643514	five period of Gastrodia elata	24.520
	SRR5643515	five period of Gastrodia elata	19.040
	SRR5643524	five period of Gastrodia elata	16.160
	SRR5643525	five period of Gastrodia elata	74.840
	SRR5643528	five period of Gastrodia elata	42.390
	SRR5643658	five period of Gastrodia elata	75.710
	SRR5643659	five period of Gastrodia elata	32.630
	SRR5643660	five period of Gastrodia elata	28.090
	SRR5643661	five period of Gastrodia elata	32.830
	SRR5643662	five period of Gastrodia elata	34.760
	SRR5643663	five period of Gastrodia elata	26.690
	SRR5643664	five period of Gastrodia elata	36.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.960
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	49.670
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	41.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.280
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	53.180
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	63.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	21.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.360
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.360
SRP279888	Gastro	Gastrodia elata tuber	47.76
	Juven	Juvenile tuber	26.81
	Mother_Gastro	Mother tuber of Gastrodia elata	6.57
	Mother_Juven	Mother tuber of Juvenile	12.52