Detail information of GWHGAAEX003683/evm.TU.scaffold_139.100


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG13020Vacuolar sorting protein VPS33/slp1 (Sec1 family)
nrgi|672183726|ref|XP_008812150.1|0PREDICTED: vacuolar protein-sorting-associated protein 33 homolog [Phoenix dactylifera]
Swissprottr|Q94KJ7|VPS33_ARATH0Vacuolar protein-sorting-associated protein 33 homolog
trEMBLtr|D7TM58|D7TM58_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI31425.3}
TAIRAT3G548600Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013517843901843670-
Transcript Sequence

Network for GWHGAAEX003683

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00995.22Sec1365903.70E-113
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20182VPS33A Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport
GO:0006904Biological Processvesicle docking involved in exocytosis

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms52.080
SRR2545915Juvenile tuber51.010
SRP108465SRR5643513five period of Gastrodia elata18.070
SRR5643514five period of Gastrodia elata24.420
SRR5643515five period of Gastrodia elata20.080
SRR5643524five period of Gastrodia elata21.620
SRR5643525five period of Gastrodia elata14.460
SRR5643528five period of Gastrodia elata16.800
SRR5643658five period of Gastrodia elata19.500
SRR5643659five period of Gastrodia elata22.110
SRR5643660five period of Gastrodia elata21.580
SRR5643661five period of Gastrodia elata23.360
SRR5643662five period of Gastrodia elata21.840
SRR5643663five period of Gastrodia elata24.020
SRR5643664five period of Gastrodia elata20.410
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_124.060
SRR6049655Rhizomagastrodiae_C368-T10_good_130.190
SRR6049656Rhizomagastrodiae_C368-T07_good_126.650
SRR6049657Rhizomagastrodiae_C368-T07_good_124.870
SRR6049658Rhizomagastrodiae_C368-T04_good_123.080
SRR6049659Rhizomagastrodiae_C368-T04_good_120.570
SRR6049660Rhizomagastrodiae_C368-T01_good_123.070
SRR6049661Rhizomagastrodiae_C368-T04_good_121.320
SRR6049662Rhizomagastrodiae_C368-T01_good_127.320
SRR6049663Rhizomagastrodiae_C368-T01_good_123.980
SRR6049664Rhizomagastrodiae_C368-T10_good_127.000
SRR6049665Rhizomagastrodiae_C368-T10_good_127.000
SRP279888GastroGastrodia elata tuber 23.24
JuvenJuvenile tuber22.14
Mother_GastroMother tuber of Gastrodia elata 11.43
Mother_JuvenMother tuber of Juvenile 14.69