Gene detail

Detail information of GWHGAAEX003690/evm.TU.scaffold_139.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16800753\|ref\|NP_471021.1\|	2.00E-23	hypothetical protein lin1685 [Listeria innocua Clip11262]
KOG	KOG0390	0	DNA repair protein, SNF2 family
nr	gi\|695031731\|ref\|XP_009403389.1\|	0	PREDICTED: SNF2 domain-containing protein CLASSY 4-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4I8S3\|CLSY3_ARATH	1.00E-82	SNF2 domain-containing protein CLASSY 3
trEMBL	tr\|J3MRW0\|J3MRW0_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB08G18390.1}
TAIR	AT2G16390	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2037232	2040353	+

Transcript Sequence
>GWHTAAEX003690 TATTAAGTTCTGTTTTTATTTTTCATAAAATTTGAATGCAATTTTTTAATTTTAATATATGAATCATTTTGTTGTGCTTCTTGCAATTGCTGTGCGTTTTATTACTTTTGCTTTTTTCACCCATTTCAACAGCAAAACTTCAAGCGAATTGATGTAAATTCAATAATGCTTGATGCCTCTGGCAATGGGATGGGCTGAGGGTTGTGTGGATGTTAACAACTTCACTATTTCTTTATAATGAGTTTGTTTCTGGTCCAAACCCAAAATTTTGACATAACAAAGGGCACATTCTAGTGATTATTGCTCTTAAATTATTTCTCATATTTATGGTTTGAGATCATCTTCATCTGTCGGTTTAAAAATCTGGTAGTTCCATCTATACCTACTCTAGTGAGTAGAGCTGGCAATTTGACCCGAAATATTTTAACTCAGCTCGAAATTTTGAGTCGAATTCAAGTCAAATGGCTCGACTAGAATCTTATTTAACTCAACTCGAATTTAACTTGACGCCAGCCCTACTTGAATTTTTTGAGCTCAAACTTTACATAGCAGTTTTCATATTCTCATGGCTGGTGTTTCAGGATGCGGAGCCGTCCTCGGCAGCCCCTATCGAGAAGGAAGAGGAATGCTGCCACGTATTCATCCTCCAGGACGACTTGGGAATCGTCTGCAGAGTCTGCGGCGTTGTTCAAAAGAGCATCGACACGATTTTCGATTTCCAATGGACAAAGGTGGTGCTTCAACCTTCATTATTGGCCAATACTATCATCAGTGTTGCTACTGCTTACACTTTGTTATTTTCTATAAATAATCAGAACACCCGCGACGCAAGGCATTACTCATCCGGAGCTCGCCGACATGATGATACGGACGAAGCGGCTGGCGACACGTACGAGAATCGTCATGAAGAAGACGCCGCCGTCGATCTCGGAATCGATCCGAGGCACAAGAAGCTGATGAAACCCCACCAGATAGAGGGGTTCAGATTCCTGGTCCAGAATCTCATGTCGGAGAAGCCCGGAGGATGCATCCTTGCTCATGCCCCGGGTTCCGGAAAAACATTCATGCTCATAAGCTTCATGCAGAGCTTCATCACCCAGATGCCGGACAAGAGGCCGTTGGTCGTCCTTCCGAAGGGGATTCTGGGAACCTGGAAGAGGGAGTTCCAGCTGTGGCAGCTGGAGGACATACCCTTATTTGATTTCTATTCCTCGAAGGCAGATCATAGGCCTCAGCAGTTTGAGATCCTGAAGAGCTGGGAGCAGAGCAGGGGGGTTTTGTTCCTGGGATACAAGCAATTCACCAACATTGTAAGCAGCTCTTCGAACGATAAGTTCGATGCGTTGTGCCGCGAAAAGCTGCTGATGGCTCCCGGGCTTTTGATCCTGGACGAGGGCCACACCCCGAGGAACAACAACACAGCCCTGGTCCAGTCTCTGGCGAGGATCAAGACCCTTCGGAAGGTGGTGCTTTCAGGCACGCTCTTCCAGAACCATGTCAAGGAGGTCTTCAACATCCTGAAGCTCGTCCGCCCGAGGTTCATGAAGGAGGAGTCGTCGCGCGCCGTCATGAAGCGCGTCCTCTCCAGCGTCGAGATACCGTCGGGGAACCGGCGTGTGAGCAAGAGCTGCAAGGAGTCCGCCTTCTGCGAGCTCGTCCAGGAGACCCTCCAGAAGGAGGACAAGGGGAAGAACTCGGGGATCAAGAATTCGGTAATCAAGGACCTGCGGGAAATGACCCACAGTGTTCTTCACTACTACAAGGGAGATTTCTTGGACGAGCTCCCCGGCATGGTCGACTTCACCGTGTTCTTGAACCTGACCCCCAAGCAGAAGAGCGTTGCCAGCAAGCTCCAGAAGCTGGATGTGTTCAAGGGGAACTCCGTCGGGAGCGCCGTCTACATGCACCCGAGCCTGAAGGAAGTCGCGGAGAGCGTCGACGGGGACAAAGCCAAAGCTGATTCTCTGAGCAACGATAAGGTCGACGGACTGATAAAGTCGCTCAGCGTCAGGGACGGGGTGAAGACGAAGTTCTTCCTCGGCATCCTGTCGCTCGCCGAATCTGCTTCCGAGAAGCTCCTCGTGTTCAGCCAGTACATCCTCCCCCTCAAGTTCTTGGAGAGGCTGGTCATCGATCGGAAGGGGTGGCGCTCGGGGAAGGAGGTTTTCATGATCTCCGGCGATTCTAACGCCGACGAAAGGGAGCGGTCAATGGAGCAGTTCAACTGCTCCGGTGATGCTAGGGTTTTGTTCGGATCCATAAAGGCGTGCGGTGAGGGAATCTCTCTGATCGGCGCGTCCAGGATCGTGATCCTGGACGTCCATCTCAACCCCTCCGTGACCCGGCAGGCGATCGGCCGCGCCTTCCGCCCCGGGCAGAGGAGGAAGGTGTACGCCTACAGGCTCGTGGCCGCTGAAACGCCGGAGCAGGAGCACCACTCCACGTCCTACAAAAAAGAGGTCATCTCCAAGCTTTGGTTCGAGTCCAACGAGTACGGCGCCACCGCCCACAGAATCGAGCTCCGCCGCGTCGACCCTGGAGACAGCGACGACATGTTCCTCCACAGCCCCGCTCTCTTGGATGATATCAAGTCCCTCCACCAAAGGTGAAGAAGGTTCTACTGGTGAGCCCTCCGTTGATCACAGCCGTTGGCTATTTTTGGTGATCACTGATCACGCCCGTTGATTAGTTGCTGCACTTGCACTCTTTGGCAGGTATCAGTTCTGTGATAAATAAACTTTGTTTTGTTTTATTTTCTTGAAAATATTTTTATCCCTAAAGAGTCAGTACACGTGGCTTCCATCCAACGGGCCGATTCTTTCTCCTTTTTACATGAAATAAATTAATTTGTTTTAAAATAAAAAATTTGGGTGGACAAGTCAGTTTGATTTGAGATTTGTTCGAGCTCGGCACCAAGCATTTGGTTTAGCCGCACCCGAGCACGAGCTCACCTCCTTTGAGTCTAAATTCGAATCAAATCAATTTCTG

Network for GWHGAAEX003690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	184	389	5.90E-19
PF00271.30	Helicase_C	531	637	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	25.430
SRP064423	SRR2545915	Juvenile tuber	18.340
SRP108465	SRR5643513	five period of Gastrodia elata	22.560
	SRR5643514	five period of Gastrodia elata	14.580
	SRR5643515	five period of Gastrodia elata	16.930
	SRR5643524	five period of Gastrodia elata	14.510
	SRR5643525	five period of Gastrodia elata	34.300
	SRR5643528	five period of Gastrodia elata	27.020
	SRR5643658	five period of Gastrodia elata	31.870
	SRR5643659	five period of Gastrodia elata	26.170
	SRR5643660	five period of Gastrodia elata	32.720
	SRR5643661	five period of Gastrodia elata	29.620
	SRR5643662	five period of Gastrodia elata	28.240
	SRR5643663	five period of Gastrodia elata	25.880
	SRR5643664	five period of Gastrodia elata	31.100
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.810
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	35.580
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	38.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	32.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.960
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.230
SRP279888	Gastro	Gastrodia elata tuber	35.86
	Juven	Juvenile tuber	36.39
	Mother_Gastro	Mother tuber of Gastrodia elata	27.88
	Mother_Juven	Mother tuber of Juvenile	25.09