Gene detail

Detail information of GWHGAAEX003695/evm.TU.scaffold_139.113

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|323356887\|ref\|YP_004223283.1\|	2.00E-27	serine/threonine protein kinase [Microbacterium testaceum StLB037]
KOG	KOG0198	0	MEKK and related serine/threonine protein kinases
nr	gi\|672168851\|ref\|XP_008804442.1\|	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	0	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|M0SRZ1\|M0SRZ1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P25300_001}
TAIR	AT1G63700	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2115849	2135100	+

Transcript Sequence
>GWHTAAEX003695 ATGCCATCATGGTGGGGAAAATTCTCCTCGAAAGATGTAAAGAAGAAGTCGCCCAAGGAGAATTTTATAGACACATTGCACAAGTTTATAAGCCCAAATGATCAGAAAGGTGCTGTAAAATCAGGGGGGCCTCGTAAACGGTACAGTAACATTCCCTCTGATAAGGGTTCTCGCTCAAGAGCAGAGTCCAGATCAACATCTCCTTCTACTCAGGTATCACGGTGTCAAAGTTTTGCTGATAGACCTGTTGCCCAACCACTTCCACTGCCAGGTCTCAACCAGGCCATATGTCGAACACCCTCAGGAATCAATGCTTCAAAGCCAATTTTGGAAAAAAGAGGCAAACCTCAGCTACTTTTGCCAATGCCTACCCGAGGCTGTGTTCCACGGAGACCAGATATGACAGACACTGATGGAGATTTGGCCACTGCATCTGTATCAAGCAACTGCTCCATTGATAGTGATGAAGCCACAGACTCTCGCCTGCATAGTCCTGCTGGAAATGATTTTGATAGAGCAATCAGTAGCGACCAAAGAGATCAATCTTCTATGACTGTTAAGAAGAGTTCAATGGAGGCAGCAAGGCCACCAAATTTACTGCTCAATGGACAGTTTTTATCTACATCACCCAAGCGTGGACCCTCGGGACAGCAACGAGTTATGCCTATATATCGCAGCTGCGCTTTTGGAAGTGCCCCAGATAGCTCAATGTCAAGTCCTTCAAGAAGTCCCATAAGAGGGGTTTTCCCAGAGCAGATTCCAACCAATGCATTTTGGGCTGCAAAGCCTTACTCAGATGTTACTTTTCTTGGGTCTGGTCAATGTTCTAGTCCGGGCTCAGGGCAGACATCTGGGCACAACTCAATGGGTGGGGAAATGCTGGGACAATTCTGGCAACACAGCAGGGGTAGTCCAGAGTGTTCCCCAATTCCAAGTCCTAGAATGACAAGCCCTGGTCCAAGTTCCAGAATTCATAGTGGAGCTGTTTCTCCTCTCCATCCTAGGGCGGGTGGTACTGCCCCAGAATCACCTACAAGTCGTCCTGAAGAAGGGAAGAAGCAAAGCCATCGTTTACCACTGCCGCCAATCAATATTTCGAACAATTCTCCATTTTCTCCAACTAACATGCAAATGCAATCTGGCACTTCTAGTATACCTCGAAGTCCTGGAAGAACTGATAATCCTCCTAGTCCTGGTTCACGTTGGAAGAAGGGAAAACTCATAGGGAGGGGTACATTTGGGCATGTATATGTAGGATTTAACAGTGAAAGCGGTGAAATGTGTGCAATGAAAGAAGTTACCCTCTTTATGGATGATGCCAAGTCAAAAGAAAGTGCAAAGCAGTTAGGGCAAGAAATCTCTCTCCTCAGGCAGTTGCGTCATCAGAATGTTGTACAATACTATGGATGTGAAATGGTTGATGATAAACTTTACATCTATTTAGAGTATGTGTCCGGCGGATCCATCCATAAGCTTCTTCAAGAATATGGACAATTTGGTGAACCAGCAATTCGTAGCTATACCCAGCAAATTCTTTCAGGCTTAGCCTATTTGCATGCTAAGAAAACAGTTCATAGGGATATTAAAGGTGCCAATATACTAGTTGACCCAAATGGACGAGTAAAACTGGCAGACTTTGGGATGGCAAAGCATATTACTGGCCAATCATGTCCTTTATCATTCAGGGGCAGTCCTTACTGGATGGCACCTGAGGTGATAAAAAATATGAACGGCTGCAATCTTGCAGTGGATATATGGAGCCTTGGATGCACAGTTCTTGAGATGGCTACTTCCAAGCCTCCTTGGAGTCAATATGAGGGGATTGCAGCTATGTTCAAAATTGGGAATAGTAAAGAGCTCCCAACAATCCCAGATCATCTCTCCGAAGAAGGAAAAGATTTTGTTAGGCAGTGCTTACAACGTGAGCCATCTAAACGCCCTTCAGCAGCTGAACTTTTGCGGCATCCGTTCATTAAGAATGCTTCTCCACTGGAAAAATTAACTGTTTGTTTTAGCACTCCTGAACAGCCTCCAGGCATTTCAAATGGTCCAAATTCCAAGTGCGTCGGCCACGCGAGAAATCTGTCCTCCTTAGTGGACACGGCAGCAGTTCATCAGCTCAAGAGTTCCAAAACATCAGCAAGTGCAAGCGAGACGAAGATGAGGAGCAACATTTCGTGCCCGGTCTCCCCCATAGGAAGCCCTCTGCTGTTCTCAAGTTCCCCACAGCACATGAATCATCATCACAACAATAATTATAATGGAAGGGTGTCGTCCCATTCGCCGATATCGAGTCCCAGAGCCATGTCTGGTGCCTCAACACCCCTCACCGGCGGCAATGGTGCCATCCCTTTCAATCATCCCGTCTACCTCCACGAAGGGCTCCCGACTACCGCGCGATCGCCACCGCCGTCGGGCGATCATTTCTACCCCTCCTATCTCGCCGCCAAGTGCGACTTTCTTCACGAGCCATACGAAAGGCCGGTGTTCTTCACAGATCAGCTGTCCCACCACATTCTCAGGGAGCACGTTAGGCTGAGCCCATCCTTTGATCTCCGCCCTCGTTCCCCAACCCTCAGCCGCGTGCACGGCGCCGTCTGA

Network for GWHGAAEX003695

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	403	658	8.80E-73

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K20717	YDA	MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.100
SRP064423	SRR2545915	Juvenile tuber	18.010
SRP108465	SRR5643513	five period of Gastrodia elata	21.370
	SRR5643514	five period of Gastrodia elata	18.980
	SRR5643515	five period of Gastrodia elata	18.170
	SRR5643524	five period of Gastrodia elata	20.540
	SRR5643525	five period of Gastrodia elata	17.360
	SRR5643528	five period of Gastrodia elata	15.340
	SRR5643658	five period of Gastrodia elata	15.520
	SRR5643659	five period of Gastrodia elata	14.860
	SRR5643660	five period of Gastrodia elata	13.470
	SRR5643661	five period of Gastrodia elata	13.500
	SRR5643662	five period of Gastrodia elata	12.200
	SRR5643663	five period of Gastrodia elata	12.930
	SRR5643664	five period of Gastrodia elata	11.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.750
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	24.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.820
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.900
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.380
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.130
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.130
SRP279888	Gastro	Gastrodia elata tuber	9.10
	Juven	Juvenile tuber	15.46
	Mother_Gastro	Mother tuber of Gastrodia elata	17.47
	Mother_Juven	Mother tuber of Juvenile	15.55