Gene detail

Detail information of GWHGAAEX003697/evm.TU.scaffold_139.115

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|116252313\|ref\|YP_768151.1\|	9.00E-36	ribosomal large subunit pseudouridine synthase C [Rhizobium leguminosarum bv. viciae 3841]
KOG	KOG1919	0	RNA pseudouridylate synthases
nr	gi\|695028353\|ref\|XP_009401551.1\|	0	PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q0J4D4\|PUS3_ORYSJ	0	RNA pseudouridine synthase 3, mitochondrial (Precursor)
trEMBL	tr\|M0T0M2\|M0T0M2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P21970_001}
TAIR	AT1G78910	0	Pseudouridine synthase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2167508	2184032	+

Transcript Sequence
>GWHTAAEX003697 GAAATCGCGAGCACGCGCGCCCCTTTGAACGCTGCCGGCGCTTGATGCTCCGATATCGTCGCCTACTCTCGCCGGCGATGGAGACAGCATTTTCCCGCCGGTTCTCGAGGATCGCACCACCGGCTGATGTAGTGGCACAGCCGGTTATCCGTGTGTCTAATAACTTGGCTCGCCTCGGCCCACCAAAGGAGGGTCCGAAGCCCCGGCAATTGCTCTCCCTCCCGCCATTCCCACCCGACGGCGTCGATCCTCTTCCAGGCCGGAAGATTTCTCCCGAAAACCGAGTTGACAGACGCTTTTTCCGCCGGAGGGTTACCGCCATCTCGTGGGTCAAGCACTATTTCAGCGAAGTGCTTCCCGATGTCATACAGAGCCATTTCAGGAAAGGAATGGTGCATTTGGAAATGTCAGACCATGAAGATTTTTCTTCTGCAGACAGGCATCACCATCATTGGCATAATCTGACAGTGATCAAAGAGAAACATGTTATGAAGCCTGGCCAGAGGATTCATATCCCGGTATCCGTTGCTGAGTCAAGAATACTAAAGAAATACGACGTTATTCCGACTGCAACTCTGCATCCAAACGCCGACGAAATAGAGTACTTGAAGAGGCTTGTCATGTATAAGGATTCTGCTATAATTGTGTTAAATAAGCCTCCGCGAGTTCCTGCCAAGGGACACTTGCCAGTTCACAACAGTATGGATGTGATGGCGGCAGCTGCTTTTTCATATGGGAGTGCAGAAGGCCCCAAATTGGTACATCGGCTTGATAAAGAAAGTAGTGGGTTGCTGCTGTTAGGCAGGAAAGAAGAAAGCTTTGCTAAACTCCATTGGCTGTTTACTGATGTTAATCTTGCCAAAACATCTTCGCAGGTGTGGAATTGTGCTTGTGAGAGGACAATGCAGCGATACTGGGCGTTGGTAATAGGATCTCCTCAAGAGAAACAGGGAGTTATCTCAGCTCCACTTTCCAAGGTACTTCTGAATGATGGTAAGACAGAGAGAATCATGCTTGCCCATCCCTCGGGCGTTGACGGTTTTCAAGAAGCAAAGACGGAGTACCGGGTGTTGGGACCTACCATTAACGGGTGCTCGTGGCTTGAGCTCCGCCCGCTCACCGGCCGGAAGCACCAGCTCCGAGTCCACTGCGCCGAGGCATTGGGCACTCCGATTGTTGGCGATTACAAGTACGGGTGGTTTGTGCACAAGAAGTGGAAGCAGATGCCCCGCTCTGACTATGACCCCTTCAGCGGGGCTCCCTATAAGCTCCGGCGGCCCAAGGGGCTTCCTGTTCAGAAGGGCAGTGTCCTTTCCAAGGTACCCCTCCTCCATCTCCATTGCAGGGAGCTTGTGATCCCCAATATCGCTAAGTTCCTTGGAAACGGTGGCGAAAGGTTTGATGATAAGTCTGATGTGCTTAGGTTTGTGGCACCCTTGCCCTCACATATGAAGATTAGTTGGAATTGTATGTCTTGTTTCTTGGTTTAATTATCATAATAGTAGTTATATATATATATATAAAAATATTTGGATCTAGGATTTCTTCATCTCAATGAGACAGTCATCACTAAATTTTGTTTTCTTAATTTTCATAATAATTTTATTGACAATGTGTGTGACTGTATGTACAAAACAAATTAACCAATTGCAGCCCAAAAGTTCGATTATTCTGATGGTTCATTTGGCTACCTG

Network for GWHGAAEX003697

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00849.21	PseudoU_synth_2	199	370	4.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0009451	Biological Process	RNA modification
GO:0001522	Biological Process	pseudouridine synthesis
GO:0003723	Molecular Function	RNA binding
GO:0009982	Molecular Function	pseudouridine synthase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.670
SRP064423	SRR2545915	Juvenile tuber	4.660
SRP108465	SRR5643513	five period of Gastrodia elata	3.570
	SRR5643514	five period of Gastrodia elata	6.040
	SRR5643515	five period of Gastrodia elata	3.420
	SRR5643524	five period of Gastrodia elata	5.370
	SRR5643525	five period of Gastrodia elata	1.050
	SRR5643528	five period of Gastrodia elata	0.620
	SRR5643658	five period of Gastrodia elata	1.370
	SRR5643659	five period of Gastrodia elata	6.700
	SRR5643660	five period of Gastrodia elata	6.480
	SRR5643661	five period of Gastrodia elata	6.780
	SRR5643662	five period of Gastrodia elata	5.160
	SRR5643663	five period of Gastrodia elata	6.200
	SRR5643664	five period of Gastrodia elata	6.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.060
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.190
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.430
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.800
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.160
SRP279888	Gastro	Gastrodia elata tuber	12.40
	Juven	Juvenile tuber	12.76
	Mother_Gastro	Mother tuber of Gastrodia elata	9.35
	Mother_Juven	Mother tuber of Juvenile	7.77