Gene detail

Detail information of GWHGAAEX003704/evm.TU.scaffold_139.124

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743776284\|ref\|XP_010918545.1\|	5.15E-175	PREDICTED: uncharacterized protein LOC105042884 [Elaeis guineensis]
trEMBL	tr\|M0SXW1\|M0SXW1_MUSAM	3.00E-130	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P12320_001}
TAIR	AT4G11450	6.00E-54	Protein of unknown function (DUF3527)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2425879	2442345	-

Transcript Sequence
>GWHTAAEX003704 AGGGCAGCATCATTGCGGCAATGGCTTTCTCCAATTCCAGTGGCCGCTGTGAAGCAGCAACGGCAGACAAAAAATTGCCTAATTAAGCGCCGCAGTCTATCCTGTCTCTCATTCCTGCTCGTCTCTTCATTCCTGTTCGTTATCGAAGTAGCAACAATCTCCATCATTGTTCAGTTTTTCTATTCTTAAGATCTGTTCATACATGGGACTAAATATTTTACTTGAGAGTCAAAATAAATTTGAAGTTGGGCCAACAATACCTAAAACTCCACGTACATCACACTCCAATAAGAAGAAGGCTGAAGAGAGGGTTGTATATCAGTGTAAAAATGTAGTAGGTAGAGATACTGATGAGCAAAAGTTGAACGCGACTGGCTTCGCTGGTAGCAACCCCAAAGATTTATTTCTTCATACTCCCACAAGCCCTTCCCGAAAAAGCATGCCTTCCAAGCTGATTTCCTTTGATGTAAAAGATAGTACCGGGGTGGGAAAACGGGGCTCGATATATCAAAGCTCTCAAGAGGTTAAGAGAATGCAAAAGCTAACAGGGGGAAGAAAGAAACTGGCACCTTACATTAATGATGATACATTCCTATCTTTTGAGCTCATCAATTCCACATCACATTCTAGATCAAGTGAATCTACTCACTTTCCTCGACTGAAGAAAGAACCAGCATTGGAGCTCTTACAATCTCAATCAAAACGTCCATCTGTTGACAACAACCAAGCACTCCTGACATCAAACACGGAGTTCCTAGACTTGTCATTTCGCGATCTGCCAGAGGAGCGCTCAAAGATCAGCATTTCGTACTCTGACGTTATTCCGGAAAAAAGAAGCTCCACAGATAGCTTGTTGGGCATATTATTGCAAACTGAAGAGACGAATGAAAATCTAACAAAGGCAACATCCGAGTTTGCAGAGGAAGTGCAAGTAGAAGTAAATTATAGTGATCATCAGTTCTCAAGTATTGGAGTAAATGCAAATTATATCTACGAAAAAGATGCTATATGCCTACTGCCCAAGTCCTCATCAGAAAAGGCGGGAGTTTCTAGCTCTTATCTTGCAGAAAGAGATATTTTGAAATCCAGCCATAAGACTCATTTCAATCCATTCAAGAAGATGCTGGATCCTATGATGAAATCAAAATCTCTACAGAATTTGTTACGCACGGAGCCAAGAACGATCAGCAGCAGCACGCCTGACTCTTGGAGCTTGAGTAGGTACAAGGTAAAGCCAAGATCCTTACTGAATGATTTCTCAAAAGCAACTCAGAAGATTGATAATGAAAGGGAAAGTGGCCAGGCCATGAAAATACCAACCTCACCTGCTCACTTACATGCCATTCTCAAATGGGATTTCAACCATGGCGACCCTTCCTTTGAGTTCTCTGTTAAAGATCCTGAAGATGTTATGAGTGCGAAGACATGGAAAACAGAAAGTGCTTTTAAATGGGTGTATACTTTCCATTGTTGCAAAATGAAGAGCAACATTATCGGGCACGGAAAAAAGTATCCTTATCTTCATCCTTCTCTTATGATAGGGCAGATGCTGGCTTCTTGTTACTTGTTCTCTGATGTCAATGAAACTGGATTGTTTGATAACTCGGCTGTGATGGAATTTATATTATATGACATTGCTCGAACAAGAAGAAGCATTTCTATTGAAAGAACTGTTAGCCCATCATATTCCAATCAAGCTTCTGTTCTTAATACTGATGATGGTTTGGTTATGCGATCTTCTAGTGAGTTTGATTCTGATCCTTCCACTTCTTGCTTGCATCAAAAGCCTGAAATTGCTGCCATTGTAACTCAACTTCCATTCAGTAAAAAAGAAGCCATGAATGCTATAGAAGAAAGAGATTATAACTGTGAAGAAACAAGTTTCCAGGGAGTAGAGCAGGAAAGAGTAGCTGCCATTGGTGACCCCTCAAGACCTGCATTTGTGAATGTAATTACACCCAGTGCGAGGCATGGGCTACCTAACAAAGTGGAAGTTGGACCTTCTTCATTGCTTGATAGATGGAGATTTGGGGGAGGCTGCGATTGTGGTGGTTGGGATATGGGCTGTCCAATCCTTGTGTTTGACAACGAAGATAATGATAATTTGGTTTCACTTTCAGGAACTCAACAGCTAGCGGCTCTTTTTGCTAAGGGTAAAAAAGAGAAGGTTCCTGCTCTTACCATTACAGCCACTGGGAAGGGACAGTATGCAGTAGATTTCCATGCACAATTTTCAAAGCTGCAGGCATTTGCGGTCTGCATTACCATTCTTCATAGCTCTGAAGCTTTGCCTGCCATCATTGAAGAAGACAGGAGCAAGCATAGGCCTCCTCACTCTGATTCCTTCAAGCTTATTCTTGAAGATGAAGTGAGGCATATCATTGAAGCAGTAGCAGAGGGAAAGGGAAAAGAGAGGAAAGTAGAGCTGACCACTCCATCTTTCTTCCTTGATCCCCCTTTTTCCCCAATGGGAAGAGTTTAACACATTGAACTTTATATATATTTGAATTAGTGGTATAGAATTCATTTTAATACATGTATGGCATAAAGATGTTGTAACCTAATCATGTTTATAAATATCGGATGGGTGTTATTCATGTTAAG

Network for GWHGAAEX003704

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12043.7	DUF3527	375	518	3.40E-25
PF12043.7	DUF3527	520	693	7.20E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.450
SRP064423	SRR2545915	Juvenile tuber	3.460
SRP108465	SRR5643513	five period of Gastrodia elata	3.910
	SRR5643514	five period of Gastrodia elata	3.990
	SRR5643515	five period of Gastrodia elata	2.910
	SRR5643524	five period of Gastrodia elata	2.740
	SRR5643525	five period of Gastrodia elata	1.460
	SRR5643528	five period of Gastrodia elata	0.770
	SRR5643658	five period of Gastrodia elata	3.680
	SRR5643659	five period of Gastrodia elata	0.670
	SRR5643660	five period of Gastrodia elata	0.340
	SRR5643661	five period of Gastrodia elata	0.530
	SRR5643662	five period of Gastrodia elata	0.760
	SRR5643663	five period of Gastrodia elata	0.900
	SRR5643664	five period of Gastrodia elata	0.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.580
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.710
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.360
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.600
SRP279888	Gastro	Gastrodia elata tuber	0.34
	Juven	Juvenile tuber	0.74
	Mother_Gastro	Mother tuber of Gastrodia elata	0.91
	Mother_Juven	Mother tuber of Juvenile	0.49