Detail information of GWHGAAEX003706/evm.TU.scaffold_139.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1735 | 2.00E-78 | Actin depolymerizing factor |
| nr | gi|672140763|ref|XP_008794195.1| | 7.59E-81 | PREDICTED: actin-depolymerizing factor-like [Phoenix dactylifera] |
| Swissprot | tr|Q7XSN9|ADF6_ORYSJ | 4.00E-83 | Actin-depolymerizing factor 6 |
| trEMBL | tr|B7EG85|B7EG85_ORYSJ | 3.00E-81 | cDNA clone:J023018P16, full insert sequence {ECO:0000313|EMBL:BAG91382.1} |
| TAIR | AT1G01750 | 2.00E-78 | actin depolymerizing factor 11 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000135 | 2510812 | 2517884 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003706
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00241.19 | Cofilin_ADF | 37 | 159 | 1.30E-35 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K05765 | CFL | Regulation of actin cytoskeleton | map04810 |
| Fc gamma R-mediated phagocytosis | map04666 | ||
| Axon guidance | map04360 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030042 | Biological Process | actin filament depolymerization |
| GO:0003779 | Molecular Function | actin binding |
| GO:0015629 | Cellular Component | actin cytoskeleton |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.790 |
| SRR2545915 | Juvenile tuber | 1.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.320 |
| SRR5643514 | five period of Gastrodia elata | 1.810 | |
| SRR5643515 | five period of Gastrodia elata | 1.790 | |
| SRR5643524 | five period of Gastrodia elata | 1.980 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.280 | |
| SRR5643659 | five period of Gastrodia elata | 0.100 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 35.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.24 |
| Juven | Juvenile tuber | 1.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.13 | |
| Mother_Juven | Mother tuber of Juvenile | 0.61 |