Gene detail

Detail information of GWHGAAEX003707/evm.TU.scaffold_139.128

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|332796432\|ref\|YP_004457932.1\|	RNA polymerase subunit B [Acidianus hospitalis W1]
KOG	KOG0214	RNA polymerase II, second largest subunit
nr	gi\|720083503\|ref\|XP_010242918.1\|	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nelumbo nucifera]
Swissprot	tr\|Q42877\|RPB2_SOLLC	DNA-directed RNA polymerase II subunit RPB2
trEMBL	tr\|A5C1N0\|A5C1N0_VITVI	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU000431}
TAIR	AT4G21710	DNA-directed RNA polymerase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2520051	2548412	-

Transcript Sequence
>GWHTAAEX003707 TCTCAGCCGTCCAATTACAGAACACAAAATCTAAGTTGAGATTAGCCAACCCTGCAATCCCACGCAGCGTCTGCCCAATTTATATCTACGCTCTACTGAATGGAAGATCTTTTCCACTCGCACTCCTGGATCTTTCTCATCTATAACACCAAATTGCAGTAGAAGAATTTGGGCAGGCAGCCTCTCTGCACTGCCGCGCACGAGCTTACTCCTCACAATACTTTCTACCCCTGTCGATCAGTTATTCTCAGTTCCCTTTAAGCTTTCGGCTGCCCTAAACCCTAAAATCTAGCCGTTGGAGCTTTGGATCCCTCTTATTGTCGGCGGAGCTGGGAAACATGGACGGAGCGGATGAATACATGATGGATGCCGACGACGATGATGAGGAAATCACCCAGGAGGACGCTTGGGCGGTGATCAGTTCCTACTTTGAAGATAAGGGACTTGTGCGGCAGCAGCTCGATTCCTTCGACGAATTCATTCAGAACACCATGCAGGAGATTGTTGACGAGTCCGCCGACATCGAGATTCGTCCCGAGTCTCAGCACAACCCTGGCCGTCAATCAGACTTCGTCGAGACAATTTACAAAATTAGCTTTGGTCAAATTTATTTGAGTAGACCCATGATGACTGAGTCAGATGGAGAGACTGCTACACTTTTTCCTAAGGCTGCAAGGCTTAGAAATTTAACTTATTCAGCACCATTGTATGTTGATGTTACTAAAAAGATTATAAAGAAGGGACATGATTGCGAAGAAGTTACCGAGACACAGGAGTTTACAAAAGTTTTTATTGGGAAGGTCCCCATTATGCTAAGGTCTAGCTATTGCACACTTTTTCAAAATTCTGAAAAGGATTTGACTGAATTGGGTGAATGTCCATACGATCAAGGTGGATATTTTATCATCAATGGTAGTGAGAAGGTTTTAATTGCACAAGAAAAGATGAGCACCAATCATGTTTATGTATTTAAGAAACGGCAGCCCAACAAATTTGCCTATGTTGCTGAGGTCCGATCCATGGCGGAGAGCCAGAACAGACCAGCAAGCAGCATGTTTGTACGAATGCTTTCAAGAACTAGTGCCAAAGGAGGTTCTTCAGGACAATACATCCGTGCGACACTTCCGTATATTCGAGCAGATATTCCTATTATTATAGTTTTCCGAGCATTAGGGTTTGTTGCTGACAAGGAGATTCTGGAACATATCTGCTACGACTTCTCAGACACTCAAATGATGGAATTGTTGCGGCCATCACTTGAAGAAGCATTTGTGATTCAGAATCAACAGGTGGCATTGGATTACATTGGGAAGCGTGGGGCAACTGTTGGTGTTACAAGAGAAAAGAGAATCAAATACGCAAAAGAAATTCTCCAAAAGGAAATGCTTCCACATGTTGGTGTAGGAGAGTACTGTGAAACCAAAAAGGCGTATTATTTTGGATATATTATTCATCGGTTGTTATTATGTGCTTTGGGTCGAAGACCAGAGGATGATAGGGACCATTATGGAAATAAAAGGTTGGACCTTGCGGGTCCTTTACTTGGTGGCTTGTTCAGAATGTTGTTTAGAAAATTAACAAGGGATGTGAGATCCTATGTTCAAAAGTGTGTTGATAATGGAAAAGATGTTAATTTGCAATTTGCAATCAAAGCAAAAACCATCACAAGTGGTTTGAAGTATTCCCTTGCTACTGGGAATTGGGGTCAAGCAAATCAAGCTGGTACAAGAGCAGGTGTTTCACAGGTGTTAAATCGTCTAACTTATGCTTCTACTTTGTCACACTTGCGAAGATTAAACTCTCCCATAGGGCGTGAAGGAAAATTGGCAAAACCACGACAACTGCACAATTCTCATTGGGGAATGATGTGTCCTGCTGAAACACCGGAAGGACAAGCTTGTGGTTTGGTGAAGAACCTTGCTTTGATGGTGTATATTACTGTAGGATCGGCTGCTCATCCTATACTGGAATTCTTAGAGGAGTGGAGTACCGAAAACTTTGAGGAAATTTCTCCTGCTGTCATTCCACAAGCAACTAAGATTTTTGTTAATGGTTGCTGGGTTGGCATTCATCGGAATCCTGACCTCCTTGTGAAAACCTTGAGGCAGCTTAGACGGCAGATTGATGTCAATACTGAGGTGGGGGTTATTCGAGACATCCGTCTTAAAGAATTGCGTCTTTATACGGATTATGGTCGCTGCAGTCGCCCGCTTTTCATTGTTGAAAAACAAAGACTGCTGATTAAGAAAAGAGATATTAGATCATTGCAACAACGGGAAACACCGGAAGAAGGTTGGCACGATCTTGTTTCAAAAGGATTTATTGAGTACATAGATACTGAGGAAGAAGAAACCACTATGATTTCTATGACAATTAACGATCTTGTGAATGCTAGGCACAATCCCGAGGAGGCGTATTCTGAAACATACACCCATTGTGAAATTCACCCTTCTCTAATTTTAGGCGTTTGTGCATCAATTATCCCATTCCCTGACCACAACCAGTCTCCTCGTAACACGTATCAGTCAGCAATGGGCAAGCAGGCTATGGGAATTTATGTAACAAATTACCAATTGCGAATGGATACTCTAGCCTATGTTCTCTACTATCCACAGAAGCCTCTTGTTACAACTCGTGCCATGGAACACTTGCATTTCAGACAGCTGCCTGCTGGAATTAATGCAATTGTTGCAATTGCCTGCTATTCCGGGTACAACCAAGAGGACTCTGTCATTATGAATCAATCTTCGATCGACCGAGGGTTCTTTAGATCCTTGTTCTTCCGCTCATATAGAGACGAAGAGAAGAAAATGGGCACCCTTGTAAAAGAAGAGTTTGGACGCCCAAACCGAGATAATACTATGGGTATGAGGCATGGATCATATGATAAATTAGATGATGATGGCCTTGCACCTCCTGGCACAAGGGTCTCCGGTGAAGATGTCATTATTGGAAAAACTTCCCCAATTGCTCAGGACGAGACTGTTGGAGCAGCATCTCGATACACGCAGCGCGATCATAGCACTAGCCTACGCCACAGCGAAAGCGGGATGGTTGATCAGGTTTTATTAACCACAAATGCTGATGGCCTGAGATTTGCGAAGGTGAGGATGCGGTCAGTCCGCATACCTCAGATAGGCGATAAATTTAGCAGCAGGCATGGCCAGAAGGGAACTGTTGGCATGACCTACACTCAGGAGGACATGCCATGGACCATTGAAGGCATCACCCCCGACATCATAGTCAACCCTCACGCCATCCCCTCTCGAATGACAATCGGTCAGCTCATTGAGTGCATCATGGGGAAGGTTGCCGCTCACATGGGGAAAGAGGGCGATGCCACTCCGTTCACCGATGTCACGGTCGACAACATCAGTAAAGCCCTGCACAAGTGCGGGTACCAGATGCGTGGGTTCGAGACGATGTACAACGGGCACACCGGGAGGAGATTGACTGCCATGATCTTTCTTGGCCCCACCTACTACCAGAGGTTGAAGCACATGGTGGACGACAAGATCCACTCAAGAGGGCGCGGCCCAGTGCAGATCCTCACCAGGCAGCCCGCTGAGGGCCGCTCTCGCGATGGCGGCCTGCGTTTCGGGGAAATGGAACGGGACTGCATGATCGCCCACGGGGCCGCCCACTTCCTCAAGGAGAGGCTTTTTGACCAGAGCGACGCCTACAGGGTTCACGTTTGCGAGAAGTGCGGCCTCATCGCTATTGCCAACCTCAAAAAGAACTCCTTTGAGTGCCGGGGCTGCAAGAACAAAACCGACGTTGTTCAGGTGCACATACCATATGCTTGCAAACTGCTCTTCCAGGAGCTCATGGCTATGGCCATTGCCCCGAGAATGCTCACAAAGGAAGAGAAAATTGTCAAGAAAAAAAGGAAGGACTCGGATTGAAAGAGGAGCAAACTTCCATATCTATATATATACATATATATATGTGCTGAATTTTCAAATGAATGTAAGTGGTATGACTGATAATCACTTGTATATTTGTTGTTTGAGTACTGTAACAATATCTCGAAAATATTTCAAAAATTTTTAATAGTGAGACAAATGCCAAATGCCAAAGCTAGATTAGCTTCAAATATGTATCACATTTCTTTTTTTTTTCTACTACTAGTGTGTACTTTCTGGGATTTTTATGGGAATTTTTGGGTACCTTAGTTTTTTAATTATTTTTGTATTTTGG

Network for GWHGAAEX003707

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04563.14	RNA_pol_Rpb2_1	35	444	2.30E-75
PF04561.13	RNA_pol_Rpb2_2	205	396	6.20E-57
PF04565.15	RNA_pol_Rpb2_3	469	533	6.60E-26
PF04566.12	RNA_pol_Rpb2_4	568	629	1.10E-20
PF04567.16	RNA_pol_Rpb2_5	653	704	1.70E-18
PF00562.27	RNA_pol_Rpb2_6	711	1081	1.80E-125
PF04560.19	RNA_pol_Rpb2_7	1083	1174	2.00E-36

Protein Sequence

>GWHPAAEX003707
MDGADEYMMDADDDDEEITQEDAWAVISSYFEDKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFVETIYKISFGQIYLSRPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKKIIKKGHDCEEVTETQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAESQNRPASSMFVRMLSRTSAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKEILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANQAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQATKIFVNGCWVGIHRNPDLLVKTLRQLRRQIDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRSLQQRETPEEGWHDLVSKGFIEYIDTEEEETTMISMTINDLVNARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEEFGRPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDETVGAASRYTQRDHSTSLRHSESGMVDQVLLTTNADGLRFAKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDVVQVHIPYACKLLFQELMAMAIAPRMLTKEEKIVKKKRKDSD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03010	RPB2, POLR2B	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	Biological Process	transcription, DNA-templated
GO:0032549	Molecular Function	ribonucleoside binding
GO:0003677	Molecular Function	DNA binding
GO:0003899	Molecular Function	DNA-directed RNA polymerase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	88.510
SRP064423	SRR2545915	Juvenile tuber	87.790
SRP108465	SRR5643513	five period of Gastrodia elata	51.330
	SRR5643514	five period of Gastrodia elata	58.030
	SRR5643515	five period of Gastrodia elata	50.080
	SRR5643524	five period of Gastrodia elata	56.660
	SRR5643525	five period of Gastrodia elata	43.810
	SRR5643528	five period of Gastrodia elata	47.450
	SRR5643658	five period of Gastrodia elata	47.550
	SRR5643659	five period of Gastrodia elata	63.570
	SRR5643660	five period of Gastrodia elata	86.240
	SRR5643661	five period of Gastrodia elata	68.580
	SRR5643662	five period of Gastrodia elata	77.880
	SRR5643663	five period of Gastrodia elata	71.780
	SRR5643664	five period of Gastrodia elata	85.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.990
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	57.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	71.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	86.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	69.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	68.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	57.170
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.590
SRP279888	Gastro	Gastrodia elata tuber	81.05
	Juven	Juvenile tuber	87.22
	Mother_Gastro	Mother tuber of Gastrodia elata	52.96
	Mother_Juven	Mother tuber of Juvenile	74.11