Gene detail

Detail information of GWHGAAEX003721/evm.TU.scaffold_139.142

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|186681849\|ref\|YP_001865045.1\|	5.00E-40	cytochrome P450 [Nostoc punctiforme PCC 73102]
KOG	KOG0157	0	Cytochrome P450 CYP4/CYP19/CYP26 subfamilies
nr	gi\|514816081\|ref\|XP_004982787.1\|	0	PREDICTED: cytochrome P450 86B1-like [Setaria italica]
Swissprot	tr\|Q9FMY1\|C86B1_ARATH	0	Cytochrome P450 86B1
trEMBL	tr\|K4A6Y3\|K4A6Y3_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si034638m}
TAIR	AT5G23190	0	cytochrome P450, family 86, subfamily B, polypeptide 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000135	2754163	2756332	+

Transcript Sequence
>GWHTAAEX003721 GTGTGTATATTTAGACCTCTGTAAGTCTTTAGAGATTTGAATTGGAATGTTTTTTAATGGAAAATGCTAAACCTTTCAAATTAGTTAAGAAAATATTCATATCAACTTTATTTTGATTATTTTTTTTGATATTGAAGTTCTCTATTTTGATTAGTTGAAATTAGGTCATCCTCTCACAATTAATAAAAAAGTTAGGGCTGATAAAAACAACAATTATCATGACTGATGCTGACCTCACCGGGCCTGATTTCAGCTCACCAACTCAAAACCATCAAGAACCCATCATCCATATTATAAATAGAGCAATCATTTCTTCATACACACAAAAGGCACGCACGTACGCCCACACAAAATATAAAGATAAAGATGGGAATCATCCCGGAGGCGATCCACACCGTCGAGCTGATCGCGGCGGCGCTGATCTTCATCATGATCCGTTCCCTCGGGCGGCGGCGGCGGCTCGGCCTCCCCTCCTTCCCGCTCGTCGGGATGCTCCCCTCGCTCCTCGTCGGGCTCCGCCGCGGCGTTTACGACTGGATCACGGCGGTCCTGTTGGACGGCGGCGGCACCTTCGCCTTCCGCGGGCCGCCCCTGACGAACCTCCACTGTGTCGTCACCGCTGACCCTAGGAACTTGGAGCACCTCCTCAAAGAGAGGTTTTCGACGTTCCCCAAGGGACCCTACTTCCGCTCTGCCGTCGCCGATTTGCTCGGTTCCGGCATATTTGCCGCGGACGACGAAGCATGGCGCTGCCAGCGCAAGACCGCCAGCCTAGAGTTCCACTCGGCCGAGTTCCGCGCGATGACCGCAAGCTCCCTGCACACCCTCGTCCACCACCGGCTTATTCCTGTCCTCGACTCCGCTGCAGCAACCCACCAAGCCGTCGACCTCCAGGACATTCTGCTGAGGCTAACCTTCGACAACGTGTGCATGATCGCCTTCGGCGTTGACCCCGGCTGCCTGCAACCCGGTCTTCCCGAAATACCCTTCGCCGCAGCCTTCGAGGACGCGACCGAGGCCACTATCTTCCGCTTCGTGATGCCGACGGCGCTGTGGAAGGCCATGCGGGCGCTCGACGTCGGCAGTGAGCGGCGCCTCCGGCGGTCCATCGCCGCTGTCGACGAGTTCGCCTACGACGTCATCAGACGCCGCCGTGCGGAGCTCGCGACACCGGCGGATGACTCCCGACGAACGGACCTTCTGACGGCGTTCATGCGTGAGGAGAAGCACTCCGACGAGTTCCTCAGAGACGTGTGCGTCAACTTCATTCTGGCGGGAAGGGACACGTCGTCGGTGGCGCTGGCGTGGTTCTTCTGGCTGCTGGGGAAGAACCCTAGGGTAGAGCAGAGGATTCTAGAAGAACTTAGCGAAATCGTAGGGGAAGAAAAGGAAGAGGGTTTGTTATTCAAGTATGAGGACATGAAGAGGATGGAGTATCTGCATGCAGCCCTCTCCGAAGCCTTGAGGCTTTACCCTTCAGTGCCAGTGGATCACAAGGAGGTGATTCAGGATGATGTGTTTCCTGATGGGACAGTTTTGAAGAAGGGAACGAAGGTGATATACTCCATGTACAGCATGGGGAGGATGGAGAGCATATGGGGGAAAGACTGCAGGGAGTACAGGCCGGAGCGGTGGCTCAGGGACGGTCGCTTCATGAGCGAGTCGGCGTATAAGTTCGCCGCCTTCAACGGTGGCCCACGGCTCTGCCTCGGCAAGGACTTCGCGTACTGCCAGATGAAGTACGTCTCCGCGAACGTTATGCGACGGTACCATGTCGACGTCGTCACCGGGCACCCGGTTGCGCCAAAGCTAGCGCTCACGATGTACATGAAGCACGGGCTGAAGGTTACCCTGAGAAGGAGGCAACAACAAGATTTGGAATAAGGTTTAAAGTTTATGATTCAGCGCGAATTGAAAACTTCAGGGTTTTAGGCAAGTGTGAAATAAGAATTCTTATATTTATTATTTTTTAATCATTTTTATTGTGCAATTGGTGTTATTATTATTATTAATATGTAATATTTAAGTAGGATATTTTTGTAAAATTGTCAAGATTATAAATACA

Network for GWHGAAEX003721

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.21	p450	81	485	2.00E-69

Protein Sequence

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP86B1

KEGG pathway

KO	Enzyme	pathway	mapID
K15402	CYP86B1	Synthesis and degradation of ketone bodies	map00072

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0020037	Molecular Function	heme binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	Molecular Function	iron ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.210
SRP064423	SRR2545915	Juvenile tuber	45.730
SRP108465	SRR5643513	five period of Gastrodia elata	34.500
	SRR5643514	five period of Gastrodia elata	39.320
	SRR5643515	five period of Gastrodia elata	30.440
	SRR5643524	five period of Gastrodia elata	31.350
	SRR5643525	five period of Gastrodia elata	11.100
	SRR5643528	five period of Gastrodia elata	2.450
	SRR5643658	five period of Gastrodia elata	7.100
	SRR5643659	five period of Gastrodia elata	2.710
	SRR5643660	five period of Gastrodia elata	2.910
	SRR5643661	five period of Gastrodia elata	0.900
	SRR5643662	five period of Gastrodia elata	1.320
	SRR5643663	five period of Gastrodia elata	0.440
	SRR5643664	five period of Gastrodia elata	1.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	78.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	88.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	48.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.550
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	82.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	71.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.320
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.320
SRP279888	Gastro	Gastrodia elata tuber	2.60
	Juven	Juvenile tuber	0.93
	Mother_Gastro	Mother tuber of Gastrodia elata	53.09
	Mother_Juven	Mother tuber of Juvenile	36.32