Detail information of GWHGAAEX003724/evm.TU.scaffold_14.2
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0773 | 5.00E-121 | Transcription factor MEIS1 and related HOX domain proteins |
| nr | gi|383212083|dbj|BAM08928.1| | 5.98E-150 | class I knotted1-like homeobox protein [Asparagus asparagoides] |
| Swissprot | tr|O04135|KNAP2_MALDO | 8.00E-134 | Homeobox protein knotted-1-like 2 |
| trEMBL | tr|I0IUH9|I0IUH9_9ASPA | 2.00E-150 | Class I knotted1-like homeobox protein {ECO:0000313|EMBL:BAM08928.1} |
| TAIR | AT4G08150 | 5.00E-121 | KNOTTED-like from Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 64206 | 98073 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003724
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03790.12 | KNOX1 | 66 | 106 | 2.00E-23 |
| PF03791.12 | KNOX2 | 121 | 167 | 4.00E-26 |
| PF03789.12 | ELK | 213 | 234 | 1.90E-07 |
| PF05920.10 | Homeobox_KN | 253 | 292 | 3.00E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-KNOX |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.030 |
| SRR2545915 | Juvenile tuber | 92.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.630 |
| SRR5643514 | five period of Gastrodia elata | 16.080 | |
| SRR5643515 | five period of Gastrodia elata | 49.990 | |
| SRR5643524 | five period of Gastrodia elata | 27.550 | |
| SRR5643525 | five period of Gastrodia elata | 55.360 | |
| SRR5643528 | five period of Gastrodia elata | 55.280 | |
| SRR5643658 | five period of Gastrodia elata | 83.070 | |
| SRR5643659 | five period of Gastrodia elata | 157.510 | |
| SRR5643660 | five period of Gastrodia elata | 174.040 | |
| SRR5643661 | five period of Gastrodia elata | 157.520 | |
| SRR5643662 | five period of Gastrodia elata | 162.810 | |
| SRR5643663 | five period of Gastrodia elata | 182.400 | |
| SRR5643664 | five period of Gastrodia elata | 200.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 39.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 35.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.780 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 172.01 |
| Juven | Juvenile tuber | 55.99 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.13 | |
| Mother_Juven | Mother tuber of Juvenile | 30.66 |