Detail information of GWHGAAEX003725/evm.TU.scaffold_14.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0483 | 3.00E-53 | Transcription factor HEX, contains HOX and HALZ domains |
| nr | gi|734352002|gb|KHN13024.1| | 8.54E-61 | Homeobox-leucine zipper protein HAT22 [Glycine soja] |
| Swissprot | tr|Q8GRL4|HOX19_ORYSJ | 3.00E-59 | Homeobox-leucine zipper protein HOX19 |
| trEMBL | tr|V7CEJ4|V7CEJ4_PHAVU | 7.00E-61 | Uncharacterized protein {ECO:0000313|EMBL:ESW27783.1} |
| TAIR | AT4G37790 | 3.00E-53 | Homeobox-leucine zipper protein family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 363839 | 366451 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003725
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00046.28 | Homeobox | 83 | 137 | 2.90E-15 |
| PF02183.17 | HALZ | 139 | 170 | 1.10E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB-HD-ZIP |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.590 |
| SRR2545915 | Juvenile tuber | 0.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.780 |
| SRR5643514 | five period of Gastrodia elata | 4.100 | |
| SRR5643515 | five period of Gastrodia elata | 1.500 | |
| SRR5643524 | five period of Gastrodia elata | 3.180 | |
| SRR5643525 | five period of Gastrodia elata | 0.090 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.370 | |
| SRR5643660 | five period of Gastrodia elata | 0.080 | |
| SRR5643661 | five period of Gastrodia elata | 0.080 | |
| SRR5643662 | five period of Gastrodia elata | 0.080 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.070 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.27 |
| Juven | Juvenile tuber | 2.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.18 | |
| Mother_Juven | Mother tuber of Juvenile | 0.11 |