Detail information of GWHGAAEX003726/evm.TU.scaffold_14.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|22299445|ref|NP_682692.1| | 2.00E-59 | endo-1,4-beta-xylanase [Thermosynechococcus elongatus BP-1] |
| nr | gi|672146061|ref|XP_008796967.1| | 0 | PREDICTED: uncharacterized protein LOC103712268 [Phoenix dactylifera] |
| trEMBL | tr|A0A023JCX7|A0A023JCX7_PHODC | 0 | Xylanase 1 {ECO:0000313|EMBL:AHH32687.1} (Fragment) |
| TAIR | AT1G58370 | 0 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 406802 | 414701 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003726
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02018.16 | CBM_4_9 | 25 | 161 | 1.50E-17 |
| PF02018.16 | CBM_4_9 | 196 | 338 | 3.30E-13 |
| PF00331.19 | Glyco_hydro_10 | 400 | 657 | 4.40E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM22 |
| Carbohydrate-Active enzymes Family | CBM22 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0016798 | Molecular Function | hydrolase activity, acting on glycosyl bonds |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.030 |
| SRR2545915 | Juvenile tuber | 0.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.390 |
| SRR5643514 | five period of Gastrodia elata | 2.980 | |
| SRR5643515 | five period of Gastrodia elata | 1.970 | |
| SRR5643524 | five period of Gastrodia elata | 1.990 | |
| SRR5643525 | five period of Gastrodia elata | 0.330 | |
| SRR5643528 | five period of Gastrodia elata | 0.160 | |
| SRR5643658 | five period of Gastrodia elata | 0.430 | |
| SRR5643659 | five period of Gastrodia elata | 0.180 | |
| SRR5643660 | five period of Gastrodia elata | 0.030 | |
| SRR5643661 | five period of Gastrodia elata | 0.030 | |
| SRR5643662 | five period of Gastrodia elata | 0.060 | |
| SRR5643663 | five period of Gastrodia elata | 0.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.930 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.810 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.930 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.930 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.04 |
| Juven | Juvenile tuber | 0.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.03 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |