Gene detail

Detail information of GWHGAAEX003727/evm.TU.scaffold_14.15

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	2.00E-77	Transcription factor, Myb superfamily
nr	gi\|743856835\|ref\|XP_010941964.1\|	2.60E-82	PREDICTED: myb-related protein Hv1-like [Elaeis guineensis]
Swissprot	tr\|Q9M2Y9\|RAX3_ARATH	5.00E-78	Transcription factor RAX3
trEMBL	tr\|C6TIC2\|C6TIC2_SOYBN	6.00E-81	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU22114.1}
TAIR	AT3G49690	2.00E-77	myb domain protein 84

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	464519	470017	+

Transcript Sequence
>GWHTAAEX003727 ATGTTTGAAAGGGTGACTGATTTTGGGGAGCATATGGTGGCGTCCTGTCTTTCATTGGTTTGGATTGGTATAACTTTGTTTTGCGTTTTGTTGATGGGAATTGGTTTTTGGCCCAAAATTCTCGATCTGCTTTTCCATTGGTGTTATGTTAATTTTGTTTGCTCAGAACTATCCGTGCGGTTGTTCTGGGCGTGGTGGGTCTTTGCTGCTGATGTTTGGAATTTGGCTGTGGATGTTTTTTTGGATCTGGTGGATGGTTTAGTTGGTCGGATGTTTCGAGCTTCTTCCTTCTTTTGTGAGACTATTGGGCTGGGAAACGCCTGTGCTGCGACTGATCCACTGGTGTTGGCTGTCCTCGTCCTGTTTCGTTTGCTCTTTTCTCAGGATCCGGTTGATGGTAGGTGGCTGTGGGAAGTTGGCTCGGCAGGTTTGTTCTGTTTGGCGAGCTCGCTCAACCTTCAGGTTCGCGTTCTTTCTTATCTTTCTGGACTGAAATTTATTGACAAGTTGAATCAGGAACAGGAAGCAGACAGACAGAGAGAGAGAGAGAGAGAAGCGATGGGAAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAGGGACCATGGTCTCCTGAAGAGGATTCAAAGCTCAAGTCTTACATAGAGCAGAATGGAACAGGAGGAAACTGGATTGCACTTCCGCAGAAAATTGGGCTGAAGAGGTGCGGCAAGAGCTGCCGGCTTCGGTGGCTGAACTACCTGCGGCCGAACCTGAAGCATGGCAGCTTTTCTGAGGAAGAGGATAACATCATCTGTAGCCTCTACATCACTATTGGAAGCAGGTGGTCAATAATAGCAGCCCAACTTCCTGGAAGAACAGACAACGATATCAAGAATTATTGGAACACCAGATTGAAAAAAAAGCTTTTCGGAAAGCCACGCAAAGATCACCCAAATTCAAACCGCCTCAATCCCAAGCAGCCATCGGATCCCAAGAAATCTGAACAAGTGCTTATTTCAAAGGACTCACACTGGCCTCAGTATCCCACTTTGAATATTGCATCAAGTCATCATCTTAATATATATGCTCAAAGCACCAATAATTCAAGCCTCATGGTGTCCTCCTCTCAGCCCGACCACCTGAGCGAACCGCTCGGGGCACAGCCGTGCGATTTTTCGGAGAATCTCGACAATATTTTTTCTTGCAATAATCAAGTGAAATTGGAAAGATATGATAGTGATTCTTTCTGCGTGGAAACAGCCATGTTTGGAGAGATTTCAGGACTGATTGGAGTGCCTCATGAATCCCATTTCAACTGGACCAGTGGCAATACAATAAATACATTGATGTATCAATCTACCACTATGCCTTCAAGCTTCCAAGGCTCAATGTAGCAGTCTCTGTGCCTTTCCGAAAAAATTGCAATATGTGGATAAATTTGATCACTATATTCTAAATTTAATTTGATTTATCAATGCAATTCGCGCATGCATGCATCGAAGCAATAATTTGCTGAAAATGAGTTCTTCGCGCAAATGTTTTTCCATCGATGTGCAGAGATTTTGTGTAAATGGAAGGATTTAATTTTGATAGTTGAATATGTAGCTAAATTATTAATTGTGTGCTCTCATATTTGGATATTTTGC

Network for GWHGAAEX003727

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	200	248	1.10E-14
PF00249.30	Myb_DNA-binding	255	297	3.20E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.280
SRP064423	SRR2545915	Juvenile tuber	4.330
SRP108465	SRR5643513	five period of Gastrodia elata	3.140
	SRR5643514	five period of Gastrodia elata	0.860
	SRR5643515	five period of Gastrodia elata	1.950
	SRR5643524	five period of Gastrodia elata	1.200
	SRR5643525	five period of Gastrodia elata	0.290
	SRR5643528	five period of Gastrodia elata	0.150
	SRR5643658	five period of Gastrodia elata	0.230
	SRR5643659	five period of Gastrodia elata	2.480
	SRR5643660	five period of Gastrodia elata	1.200
	SRR5643661	five period of Gastrodia elata	2.570
	SRR5643662	five period of Gastrodia elata	1.590
	SRR5643663	five period of Gastrodia elata	0.810
	SRR5643664	five period of Gastrodia elata	1.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.680
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.840
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.560
SRP279888	Gastro	Gastrodia elata tuber	4.27
	Juven	Juvenile tuber	2.17
	Mother_Gastro	Mother tuber of Gastrodia elata	5.34
	Mother_Juven	Mother tuber of Juvenile	4.81