Detail information of GWHGAAEX003728/evm.TU.scaffold_14.17
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428204092|ref|YP_007082681.1| | 5.00E-120 | gamma-glutamyl phosphate reductase [Pleurocapsa sp. PCC 7327] |
| KOG | KOG4165 | 0 | Gamma-glutamyl phosphate reductase |
| nr | gi|731412317|ref|XP_010658318.1| | 0 | PREDICTED: pyrroline-5-carboxylate synthetase isoform X1 [Vitis vinifera] |
| Swissprot | tr|O04226|P5CS_ORYSJ | 0 | Gamma-glutamyl phosphate reductase |
| trEMBL | tr|F6HNT7|F6HNT7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56306.1} |
| TAIR | AT3G55610_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 511141 | 558917 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003728
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00696.27 | AA_kinase | 70 | 315 | 1.50E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12657 | ALDH18A1, P5CS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Arginine and proline metabolism | map00330 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006561 | Biological Process | proline biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016620 | Molecular Function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| GO:0004349 | Molecular Function | glutamate 5-kinase activity |
| GO:0004350 | Molecular Function | glutamate-5-semialdehyde dehydrogenase activity |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 31.250 |
| SRR2545915 | Juvenile tuber | 38.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 23.040 |
| SRR5643514 | five period of Gastrodia elata | 27.550 | |
| SRR5643515 | five period of Gastrodia elata | 25.260 | |
| SRR5643524 | five period of Gastrodia elata | 28.920 | |
| SRR5643525 | five period of Gastrodia elata | 13.340 | |
| SRR5643528 | five period of Gastrodia elata | 9.930 | |
| SRR5643658 | five period of Gastrodia elata | 12.240 | |
| SRR5643659 | five period of Gastrodia elata | 21.970 | |
| SRR5643660 | five period of Gastrodia elata | 20.920 | |
| SRR5643661 | five period of Gastrodia elata | 18.860 | |
| SRR5643662 | five period of Gastrodia elata | 21.730 | |
| SRR5643663 | five period of Gastrodia elata | 23.370 | |
| SRR5643664 | five period of Gastrodia elata | 19.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 29.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 27.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.34 |
| Juven | Juvenile tuber | 36.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.06 | |
| Mother_Juven | Mother tuber of Juvenile | 34.04 |