Detail information of GWHGAAEX003731/evm.TU.scaffold_14.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672133345|ref|XP_008790288.1|2.46E-74PREDICTED: growth-regulating factor 6-like [Phoenix dactylifera]
Swissprottr|Q6AWY3|GRF6_ORYSJ1.00E-45Growth-regulating factor 6
trEMBLtr|A0A067GGN0|A0A067GGN0_CITSI4.00E-69Uncharacterized protein {ECO:0000313|EMBL:KDO78868.1}
TAIRAT4G377401.00E-40growth-regulating factor 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000012714550718507-
Transcript Sequence

Network for GWHGAAEX003731

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08880.10QLQ1201509.20E-08
PF08879.9WRC1912332.90E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRF

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.890
SRR2545915Juvenile tuber10.850
SRP108465SRR5643513five period of Gastrodia elata2.470
SRR5643514five period of Gastrodia elata3.370
SRR5643515five period of Gastrodia elata2.010
SRR5643524five period of Gastrodia elata3.580
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.070
SRR5643658five period of Gastrodia elata0.000
SRR5643659five period of Gastrodia elata7.020
SRR5643660five period of Gastrodia elata6.990
SRR5643661five period of Gastrodia elata10.060
SRR5643662five period of Gastrodia elata2.640
SRR5643663five period of Gastrodia elata2.100
SRR5643664five period of Gastrodia elata2.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_14.370
SRR6049655Rhizomagastrodiae_C368-T10_good_15.420
SRR6049656Rhizomagastrodiae_C368-T07_good_15.740
SRR6049657Rhizomagastrodiae_C368-T07_good_14.320
SRR6049658Rhizomagastrodiae_C368-T04_good_15.430
SRR6049659Rhizomagastrodiae_C368-T04_good_11.930
SRR6049660Rhizomagastrodiae_C368-T01_good_18.160
SRR6049661Rhizomagastrodiae_C368-T04_good_17.750
SRR6049662Rhizomagastrodiae_C368-T01_good_113.200
SRR6049663Rhizomagastrodiae_C368-T01_good_17.390
SRR6049664Rhizomagastrodiae_C368-T10_good_15.210
SRR6049665Rhizomagastrodiae_C368-T10_good_15.210
SRP279888GastroGastrodia elata tuber 1.07
JuvenJuvenile tuber1.75
Mother_GastroMother tuber of Gastrodia elata 0.19
Mother_JuvenMother tuber of Juvenile 0.94