Gene detail

Detail information of GWHGAAEX003735/evm.TU.scaffold_14.26

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|476001795\|gb\|AGI62039.1\|	0	AP2-3 [Erycina pusilla]
Swissprot	tr\|Q38914\|ANT_ARATH	8.00E-154	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|M9QXK4\|M9QXK4_9ASPA	0	AP2-3 {ECO:0000313\|EMBL:AGI62039.1}
TAIR	AT4G37750	3.00E-153	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	925887	930134	+

Transcript Sequence
>GWHTAAEX003735 TTTTTAAAGAAATTAGTAGCAAAGCAAGAAGAGGATTTAAGCAGCGCCAGTGATCGCGCTTAGTATGCCTACTTAAGCAGTCAACACTCTCTAACCAAATCCAAAACAAAATCAACTGATTTTGAGGACTAAATAAGTCAGGAAAGAATTCTGCGGAAGTAAAGTCTCGCTGTCTCAGCGCCTCTCGTCGTGGCAGCAGGCTTGTCTTGATCTCATTGCTCATTAGAGGTTTATCATAGATTTCAAAATCCTTAATAAAAGGGAAGGAGGAGGGATAAGGAAGGAAAGAAGGGGAAAAGGCAAAGTTTTGGTCTTTCTTTTCCCAAACACAGATCCCTAAGGATTTCAGGAGTGACACAGCACACAGCACAGCAGCAGTAGCATCAATGCATCAATCCATATCCAGATAGATGATGAAAGAAAAGCCTTTTTTGAGAGAGGTCTCTTCATTCCCCATAAAACAGAGCATATGAATAAAGATATGGAGAAGATTTCTGTGTGAGGAAGATGAAGTCCATGAACAATAGCAACTGGTTGGGCTTCTCTCTCTCCCCTCAATTAGGAATGGAAGTTGCTTCAGATCCCCTTAAGAACACGCACCCTCAATCCCTTCATCAATCTTCCTCTGCTTCCGCTTCCCCTTTTGTTCCAGCAAACCTGTTTCTTGCTTTTCCTCATATCAGCAGCTCAGGCATTTGCTATGGAGTTGAGGGGGAAAACGGAGGGTTTTACCCTCAACTCTCATCGGTCATACCAGTCAAGTCCGACGGCTCTCTCTGCATCATGGAAGCATTCAGAAGATCGCAAGAAGGAATGGTTCCATCTCCATCTCCAAAACTCGAAGATTTTCTCGGCAGTGGTCCAAACATGGGGACCCATCAGGAAGCAATGTCTTTAAGCTTGGACAGTAGCAACATGTGTTATGGACAAAATATTGAGAATGAGAGCAATGGAAGCCATTCCTCTTCTCTTGAGCTCTTTCAGCAAACTTTCAGGCACCAAAACTACTTCCATGATATGTACGAAGGCTCTCCATTGGTCGGAGAGCAAATTTCGACTGATTGCAGATTTCAGGGCAATGAGGGAGAGGCGGGTTTCAGCTCTCTGGGCTTATTGAGGCACGGAGATCTCAAGTCCTTGAGCTTATCCATGAGCCCTGGATCTCAATCTAGCTGCGTAACTGCTCCACAGAATCACATCAGTGCCTCTACTTCAGAAAATGAACCGCCTTTGGCTTTGGAACATTCAAAGAAGAGGGCAAATGGAAAGGGAGGTGAGAAGCAACCGCTTCACAGGAAGTCCATTGATACATTTGGCCAGAGAACATCACAGTACAGAGGAGTTACAAGGCATAGATGGACAGGGAGATATGAAGCTCATCTTTGGGATAACAGCTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGGCAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAGGCAGCAAGAGCCTATGACTTGGCTGCATTGAAGTATTGGGGACCTGCTACTCACATCAATTTTCCTCTGGAGGATTACCAGGTGGAACTTGTGCAAATGAAGAATATGACAAGGCAGGAGTATGTTGCACACTTGAGAAGAAAAAGCAGTGGATTTTCAAGAGGGGCCTCTGTTTATCGCGGAGTAACAAGACATCATCAGCATGGAAGATGGCAAGCTCGCATCGGAAGAGTCTCTGGAAACAAGGATCTTTACCTCGGAACCTTTGGCACGCAGGAAGAGGCCGCCGAAGCCTACGACATTGCCGCGATCAAATTCCGAGGCACGAACGCCGTCACGAACTTCAACATGTCGAGGTACGACGTCGGGAAGATAATGTCGAGCGGCACGCTTCTGTCTGGCGAGCACGCTCGGAGGAACGGAGCTGCTGAAATTTTCGACTGCGGAGCGTTGGCAGAGGGGCAGAACCCGAACGAAGAAAGCAACAACGCGTCGTCAGAGTGGGGAATGGGGCTCTACCAGTCCCCGCCGCCGCCACAGACATTCGAAAGCGCGGAACCGCTCAATCACAAATCGGCGTCGGCCGCCGGCAAGCATCACCACGACCAGGGCGGCGCGTACCTGCCGAATTTTCAGGGCATGTTCGGAGCGGAGAGTTGGAGCTCAGAAGAGCAAGGCATGAGGTTCGCCGGCCCCACGACTCAGCTGGTCTCGTGGGGTCCGGAGGCACCGAATCTGCCGAGGAATTCCACAGTTTATGCTGCATGGAATGATGCCTGAAGCTTTATCTTTTTGCCAAAGATGCTGCCATGAAGAAAGAAAAGAAGGTGAAAAAGAGAAAGTAGGCAATTGGTTGTGTTCTGTGTTTTATTTTTTACCAGATGGTTCAAATTTTGGCAGTTCTGCTTTTGTACTATGTGGGGAAAAGATGTTTCCATTTATTGTGTCAAATGGTTTTCTTGTCAAGCTTTAGTGGTTAAGATTCAGTAGTTGTTAGAGAAGGTTTAGTAGATTAGGCTTCCAAGTTTAGTTGATATTTAGAGAGGAGGAGGATCTTTGCTTTGTTTTGCAGAGGATGAAAAGCACGAGATGATGAATGGTTAAAATTTATAGAAAATGTTGTCTTTTTTTGTATAATGCGGGAAAAGGGAATTCCTCAGTTATAATATAAAGAAACACAGCAC

Network for GWHGAAEX003735

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.19	AP2	274	333	1.60E-12
PF00847.19	AP2	376	427	1.90E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.390
SRP064423	SRR2545915	Juvenile tuber	5.210
SRP108465	SRR5643513	five period of Gastrodia elata	4.130
	SRR5643514	five period of Gastrodia elata	6.220
	SRR5643515	five period of Gastrodia elata	4.850
	SRR5643524	five period of Gastrodia elata	6.170
	SRR5643525	five period of Gastrodia elata	0.710
	SRR5643528	five period of Gastrodia elata	0.120
	SRR5643658	five period of Gastrodia elata	0.310
	SRR5643659	five period of Gastrodia elata	0.920
	SRR5643660	five period of Gastrodia elata	0.670
	SRR5643661	five period of Gastrodia elata	0.310
	SRR5643662	five period of Gastrodia elata	0.100
	SRR5643663	five period of Gastrodia elata	0.160
	SRR5643664	five period of Gastrodia elata	0.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.700
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.540
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.510
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.490
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.630
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.380
SRP279888	Gastro	Gastrodia elata tuber	0.36
	Juven	Juvenile tuber	3.47
	Mother_Gastro	Mother tuber of Gastrodia elata	0.25
	Mother_Juven	Mother tuber of Juvenile	0.70