Gene detail

Detail information of GWHGAAEX003746/evm.TU.scaffold_14.37

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672183644\|ref\|XP_008812106.1\|	1.66E-134	PREDICTED: uncharacterized protein LOC103723077 [Phoenix dactylifera]
trEMBL	tr\|W9S629\|W9S629_9ROSA	1.00E-117	Uncharacterized protein {ECO:0000313\|EMBL:EXC12627.1}
TAIR	AT3G49800	2.00E-91	BSD domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	1280241	1314802	-

Transcript Sequence
>GWHTAAEX003746 GGAGAGAAACCATTATCCGCTTCAGCAGTCGAAGAATCTTTGTAATTGTGCGTCCCAAAGTTCTGCGTTCCTTCGCTCTTGCGGTGGACAGGGAGGGGGGAAGAGCAGCCGCAATGTCATGGCTTGCCCGCTCTCTGGTAAACTCATTCCGGGGCGACGACAACCAGGAAAGCGAGCACAATCCCTCGACGAAACCTGGGAGCGATGGCAAATCCGGAGCTCAAGTCCACACCTTTGACGAGCAGTCATCGCCCAGCAGAGGAGTCAAAGAAGATCTCTCCGAGCTCACCAAGACCATTACCCGCCAGTTCTGGGGCGTCGCCTCCTTTCTCGCTCCTTCTCCCGATGTCTCTCCGTCTGATCCTTCCGATTCTGCTGCGTCTGAAGTCTCGGATGAGTTGGAGGTGTCCAAGTCGCCGAGGATGGCCGGAATTCGGAGCGATTTCGCGGAGCTTGGGGGAAAATTCAAGAGTGGAATTTCGATGCTGTCAAATGCTAAGGCAGTATCTGAGATCTCAAAGATCGCGTCCACGTTCCTGCCCTTTGGAGACGATGGCGCGGAGGAGGAGGAAGAGGACAGAGGGTTCGGAGGCGAGGCTTTGGGGGTGACGGAGGATGTTCTTTTATTCGTGAAGAACATTTCAGTGCATCCCGAAACCTGGCTGGATTTCCCGTTGATTGCTGGTGATGAGGATCCTGATGAGTTTGAAATGTCTGATGCTCAGCAAGAGCATGCATTGGCTGTGGAACATCTCGAACCAAGTCTAGCGGCACTTAGGATTGAGCTCTGCCCAAGTCACATGAGCGAAGGGAGCTTTTGGAAAATATATTTTGTGCTTCTGCATTCTAGACTGAATAATAATGATGCTGAACTTCTGTCAACTCCACAGATTGTGCAAGCTAGAGCGGCACTGTTACAGGATCTTGAGAGCCGTAGAAAACCGAACGCCAATGAGTCTTCATGGAAGAATAAGAAAGAGGAAGAGCAGCCTCCTCCTGAAATCCCTTCATCAGCACCTCCCCAAGCCGAAGATGCCTCCGCCCCCATTCCCGTTCTGGCTGTCGAAACGGAAAAGCATCCGGTGGAAAGCGACGAGGTGAAAATCATAGACAAATCAGTCATCGAAGAAGGCAGATCTCAGAAGGGCGCGAATCGTCAGGCGTATGCTTCGAGCGCGCCAAAGCCGAAGGACGATGAGAGCTTCGAGGACGATTGGCTCGAGGATGAGGCTGGGGAAGCAAAGGCTCCCGCTCCTCTGGGAAACGACGAGGATGTATCTTTCAGCGATCTCGAGGAAGACGACGATGAGCGCGGCGGAACCAAGTGGATCCCGAAGCCCAATCCTGCAGAAGGGAAGGAATCGAGGGGATGGGTTCAGCTGAGCAAGAATCGCGCAAGTCCCGCGCCGAAGAGTAGGGACGGTTGGTCAGATGTGGATGAGCTTGACATAGAATGATCCATGGCGCCATTGCCGGCTTTTTACCCACTGGTATGTAGTAAGCTCCTGTTAGTAATTTGCTCGTCTTCGTCTTCGTCTTCCCCTCTATGTTTATGCTCTCTCTGTACATAGCTCCTGTTTGCTGGCTTGTTCATCTCCTTCTTGTTGGATCTGAATCTTGTCTTCAGTCCACCGTAGCAACTAAAAAAAGTTGTTCTAAAAAATTGGGATTTTAGGGCTTCTTTCCTGAATCTCTTTAAAGGCATGCTTCTGAAACGAAAGCCATCCTTCTATTTTGTTGCGTTGTGGAAATTTGATTCATTCTTGCTGGATTTGGTTTCTGTTGCATAGCTCTTGCAATCTGCACTAACAATTAGGTCCAAACAATCTATAATCAAAGAGAAAAAATAAGAAGGAAGCCTTTAATTGGCACTAACTCATGGCACATTTTTGGAATGTTCTTCTGTCTTACAAAAGAGAGATTTTGGAAGATAATGCCCATTATCTTCATTGTAAAGATTCGACATATGAAGCTCCTTGAATTCATCATAGTTTTTATTACTTGATTATTAAAAGAGGG

Network for GWHGAAEX003746

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03909.16	BSD	196	249	1.50E-13

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	62.760
SRP064423	SRR2545915	Juvenile tuber	42.440
SRP108465	SRR5643513	five period of Gastrodia elata	42.320
	SRR5643514	five period of Gastrodia elata	41.200
	SRR5643515	five period of Gastrodia elata	35.790
	SRR5643524	five period of Gastrodia elata	37.910
	SRR5643525	five period of Gastrodia elata	45.760
	SRR5643528	five period of Gastrodia elata	39.620
	SRR5643658	five period of Gastrodia elata	56.590
	SRR5643659	five period of Gastrodia elata	34.530
	SRR5643660	five period of Gastrodia elata	40.220
	SRR5643661	five period of Gastrodia elata	37.810
	SRR5643662	five period of Gastrodia elata	37.780
	SRR5643663	five period of Gastrodia elata	33.940
	SRR5643664	five period of Gastrodia elata	41.530
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	66.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	53.620
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	89.080
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	71.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	88.180
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	81.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	72.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.000
SRP279888	Gastro	Gastrodia elata tuber	37.74
	Juven	Juvenile tuber	77.26
	Mother_Gastro	Mother tuber of Gastrodia elata	32.42
	Mother_Juven	Mother tuber of Juvenile	35.86