Detail information of GWHGAAEX003756/evm.TU.scaffold_14.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|11498149|ref|NP_069374.1| | 5.00E-25 | 50S ribosomal protein L11P [Archaeoglobus fulgidus DSM 4304] |
| KOG | KOG0886 | 8.00E-102 | 40S ribosomal protein S2 |
| nr | gi|470137350|ref|XP_004304429.1| | 8.39E-108 | PREDICTED: 60S ribosomal protein L12-like [Fragaria vesca subsp. vesca] |
| Swissprot | tr|O50003|RL12_PRUAR | 7.00E-106 | 60S ribosomal protein L12 |
| trEMBL | tr|M0TT37|M0TT37_MUSAM | 6.00E-108 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P23840_001} |
| TAIR | AT3G53430 | 8.00E-102 | Ribosomal protein L11 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 1455981 | 1459914 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003756
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03946.13 | Ribosomal_L11_N | 13 | 70 | 8.90E-24 |
| PF00298.18 | Ribosomal_L11 | 75 | 144 | 2.40E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02870 | RP-L12e, RPL12 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.520 |
| SRR5643514 | five period of Gastrodia elata | 0.200 | |
| SRR5643515 | five period of Gastrodia elata | 0.120 | |
| SRR5643524 | five period of Gastrodia elata | 0.530 | |
| SRR5643525 | five period of Gastrodia elata | 0.130 | |
| SRR5643528 | five period of Gastrodia elata | 0.260 | |
| SRR5643658 | five period of Gastrodia elata | 0.500 | |
| SRR5643659 | five period of Gastrodia elata | 0.210 | |
| SRR5643660 | five period of Gastrodia elata | 0.350 | |
| SRR5643661 | five period of Gastrodia elata | 0.120 | |
| SRR5643662 | five period of Gastrodia elata | 0.120 | |
| SRR5643663 | five period of Gastrodia elata | 0.530 | |
| SRR5643664 | five period of Gastrodia elata | 0.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.090 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.08 |
| Juven | Juvenile tuber | 0.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.83 |