Detail information of GWHGAAEX003761/evm.TU.scaffold_14.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672110896|ref|XP_008797845.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Phoenix dactylifera] |
| Swissprot | tr|Q9ZQF1|PP152_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g15630, mitochondrial (Precursor) |
| trEMBL | tr|D7STD9|D7STD9_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI20053.3} |
| TAIR | AT2G15630 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 1616330 | 1618568 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003761
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 121 | 149 | 0.031 |
| PF13041.5 | PPR_2 | 156 | 201 | 1.10E-12 |
| PF13041.5 | PPR_2 | 222 | 271 | 1.30E-17 |
| PF13041.5 | PPR_2 | 293 | 339 | 1.10E-11 |
| PF13041.5 | PPR_2 | 362 | 411 | 9.10E-21 |
| PF13041.5 | PPR_2 | 434 | 482 | 5.90E-14 |
| PF13041.5 | PPR_2 | 504 | 553 | 4.50E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.860 |
| SRR2545915 | Juvenile tuber | 2.440 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.080 |
| SRR5643514 | five period of Gastrodia elata | 5.540 | |
| SRR5643515 | five period of Gastrodia elata | 4.890 | |
| SRR5643524 | five period of Gastrodia elata | 4.820 | |
| SRR5643525 | five period of Gastrodia elata | 3.450 | |
| SRR5643528 | five period of Gastrodia elata | 2.940 | |
| SRR5643658 | five period of Gastrodia elata | 3.240 | |
| SRR5643659 | five period of Gastrodia elata | 4.040 | |
| SRR5643660 | five period of Gastrodia elata | 5.290 | |
| SRR5643661 | five period of Gastrodia elata | 3.500 | |
| SRR5643662 | five period of Gastrodia elata | 3.890 | |
| SRR5643663 | five period of Gastrodia elata | 4.030 | |
| SRR5643664 | five period of Gastrodia elata | 3.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.520 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.46 |
| Juven | Juvenile tuber | 8.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.51 | |
| Mother_Juven | Mother tuber of Juvenile | 7.10 |