Gene detail

Detail information of GWHGAAEX003763/evm.TU.scaffold_14.53

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2982	9.00E-101	Uncharacterized conserved protein
nr	gi\|672192334\|ref\|XP_008775741.1\|	0	PREDICTED: tubulin-folding cofactor E isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q8GRL7\|TBCE_ARATH	0	Tubulin-folding cofactor E
trEMBL	tr\|M5XWF5\|M5XWF5_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23505.1}
TAIR	AT1G71440	9.00E-101	tubulin folding cofactor E / Pfifferling (PFI)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	1709287	1752954	-

Transcript Sequence
>GWHTAAEX003763 GATCGCGTCCAGAAACTCCCGTGCACGATCTGAAGGGAGGCTGACGAGATGGGGAGGTCGATGCGAGATCGAGAGCGCCAATCGAAGAATCTAGGCCCTGAGGGGAGACTAAGGGAGAGGACAACATGGAGATATGGAGGGAAGGATAAGGTGAAAACGAAATGTCTGCTGGATTTTATAAGGGAAAGCTGAGTGATCCCCGCAATTAGGTTAAGGAAAAAATTGACGTGGCTGAAGTGCTACGTTAGCATCCATGTCATCAAGAAAAATTAGGAGTATTAGAAGGAGTATTATAATATTGTCCTTAAAAAATTTGTACAAAGCATTTGTGTTTAGGACAATTCGCAAGAAAAGAAAATCTAGAATTCTTATTGACAAAAATGTGAACATTTTTTTTGGAGGATAACTAGTTGGCCACACAGCCATTTGATCTTTGTTCGATTACATTTTATAGCCGTCCTCAGACGGCATCATATTTAATCAGCTCTCCTTCCTCGCCTTCTCGGGGCGAATTCCTGAACTCCCTGCTGTTCGTGCAGCACTCGGATAACATTCCGATCCCCTTACTTCTCCCCTGTTCCTTTTAATGTATCCTTGAAGAACTCATCGATCTTCTCTCCCGCGGCATCTCTACCTCTCCACTGGGTCGTTCAATTGTAAATCCTTGATCAGGGAGAGGGACACAACCCCATAGTCATGAGCGAGCCAATTGATACAGCCTGCGTTTCCTCACACCAGGCAGTTGATATGACAGGAGATAATGGGTTATGGTTTAAAATTGAGCAAAGGGTTCAGGCGGTTGAAAATCTGCGAAGGATCGGAACTGTTCGGTACATCGGACAAGTCGAAGGGCACACTGGCCAATGGATTGGCGTAGACTGGGACGACGGCGAGGGAAAGCATGACGGAAGAGTCGACGGTGTGAGGTATTTTACAGCGAGAAGTGGGCAGTCGGCGTCGTTTGTTCGCTCCAAAAGCCTGAGCAGTGGGATCTCTCTATTAGAGGCGCTGTATCATCGGTACCGGGGCGAATCCACTAAGGAAGAGGAAGATGAAATGTATGTCCTTTCTTCAAACAAACGACGGGTCTCTATACAACTTGTGGGGAAAAGTAAAACTGAGGAAAAGTTCAAGCATTTTGAAGATTTGAATAGTGCAGCCATGCCTTATTTGGGAGTTGGCTCAATCAATCCTTCTCAAGAAATCAGTAATGTTGTTCCAAATTTGAAGGAGCTTGATTTGACAGGCAATCTTCTTTCAAGGTGGCAAGATGTTAATTCCCTATGTGAATCTTTGCCATCGATAGAAATCCTCAATTTAAGTAGCAATCTCTTGGAGACTGAAGTGCCAGAAGTTCCTTCATTTTCAAAAATTCGCATTTTGGTACTCAATAACTGTGGCGTATCCTGGAAACAGGTTGAGAGACTGAAGCAGTATCTTCCTACCATTGAAGAGCTTCACCTTATGGGAAATAACATGAGGACTCTGCTGCCTTTACCTTTAGATGCAGACATTACTGATGTCCAAGGGTTCAAGTCATTACGTCTCTTAAACCTGGATAACAATTGCATAAATTCTTGGGAGGACGTTTTAAGCCTTTCAAAATTAAGAAGCTTGGCACAACTTCATCTGAACAAAAACAAGTTGCATCGTATATTCTACCCCGCAAATCTTGCATTGCCTGGTTTTCAAGATATTTGTTATACACCATTTGAAAAACTGGAATGCCTTCTTTTGGGTTCCAATGATATTGACTCGCTGGTATCTGTTGATTCGCTGAACCTTTTCCCTAAATTAGTGGATGTCAGGCTTTCTGAAAATCCTGTTGCTGATACAACTAAAGGTGGTGTTTCCAGATTTATCTTAGTTGCACGCTTAGCAAAAGTTAAGATGCTAAATGGAAGTGAGATAAGTGTGCGAGAGAGAAAGGAATCAGAAATACGGTATATCCGCCTTGTTGTGGCAATGATGCAATCAGCAGATCTACAAGAGATAAGCATACAACACCCAAGGTTTGCAGAGCTTAAGGCTCGTTATGAAATTGATGATGAGAAACCATCGGTTAGAGGAGCAGTCCCTCAAAAAATGTCTTCGGAACTTATATCCATCACCTTGATGTGCGTTGGAGCTTGCATGGGAGAGAGGCAACCTCTGTCAAAAAAATTGCCGCCTACAACTACGGTTGGCAGGTTAAAGGTTCTTTGTGAGAGTTTCTTTAAACTGAAGGAAGGGATCAAGTTGAGGCTGTTTCTTGAAGAGAAGGGTTTTCCTTTGCCAATGCTGCTTGGTGATGATATGGCTCCTTTGATGGATGTTGTGGCAGGCAATGAGGCAACCGTTTTATTGGATGAAGAAAAATAAATTTTTATTTATGCAATAATTATTCATAGAATATTTCTTATTTTTTTATTTTCTTAAGAGCACTGCTACATTACTCTCAATTTCTCCCTAAAAACTTCAATTGCTCCCTAAGTTTAAAATGGGACTCATCCCATGATCTTGTGTGTGAGCTCTAGTGCTACTCCTACCCAAAGCCTTAACGGTTGATTGTTTCAGTTTTTTTTTTTATCAATTTGTTCAGGATTTTCTCACATTTTTTCAATGCTATATGTCCAAACAAATGCATAAGAAAACATTTTGGACGCTACGTTATTAGAAAAAGTATCTAGTGAATCTCTTGTAGCATTTGAACACTTCTCGCCAAATTCAAACTTTATTTATATTTTTGTTTGTCTACCAGATTTATTTTGTGATGTGTTAGCATGACAATCCTTATT

Network for GWHGAAEX003763

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01302.24	CAP_GLY	29	94	8.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	53.800
SRP064423	SRR2545915	Juvenile tuber	39.520
SRP108465	SRR5643513	five period of Gastrodia elata	39.880
	SRR5643514	five period of Gastrodia elata	43.390
	SRR5643515	five period of Gastrodia elata	33.510
	SRR5643524	five period of Gastrodia elata	37.780
	SRR5643525	five period of Gastrodia elata	33.710
	SRR5643528	five period of Gastrodia elata	47.840
	SRR5643658	five period of Gastrodia elata	37.030
	SRR5643659	five period of Gastrodia elata	35.720
	SRR5643660	five period of Gastrodia elata	36.440
	SRR5643661	five period of Gastrodia elata	26.430
	SRR5643662	five period of Gastrodia elata	33.940
	SRR5643663	five period of Gastrodia elata	34.250
	SRR5643664	five period of Gastrodia elata	34.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.710
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	23.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.790
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.820
SRP279888	Gastro	Gastrodia elata tuber	26.89
	Juven	Juvenile tuber	54.26
	Mother_Gastro	Mother tuber of Gastrodia elata	39.08
	Mother_Juven	Mother tuber of Juvenile	61.01