Detail information of GWHGAAEX003767/evm.TU.scaffold_14.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-146 | FOG: PPR repeat |
| nr | gi|695043736|ref|XP_009409574.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LUC2|PP231_ARATH | 1.00E-146 | Pentatricopeptide repeat-containing protein At3g14730 |
| trEMBL | tr|V7CLD6|V7CLD6_PHAVU | 3.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:ESW30964.1} |
| TAIR | AT3G14730 | 5.00E-146 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 1834463 | 1837752 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003767
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 98 | 122 | 0.2 |
| PF13041.5 | PPR_2 | 197 | 242 | 3.20E-09 |
| PF01535.19 | PPR | 272 | 299 | 5.80E-05 |
| PF01535.19 | PPR | 300 | 326 | 0.0065 |
| PF01535.19 | PPR | 372 | 392 | 0.59 |
| PF01535.19 | PPR | 402 | 426 | 4.60E-07 |
| PF01535.19 | PPR | 433 | 461 | 0.00038 |
| PF01535.19 | PPR | 467 | 486 | 1.2 |
| PF01535.19 | PPR | 538 | 561 | 0.044 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.580 |
| SRR2545915 | Juvenile tuber | 1.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.430 |
| SRR5643514 | five period of Gastrodia elata | 2.550 | |
| SRR5643515 | five period of Gastrodia elata | 2.350 | |
| SRR5643524 | five period of Gastrodia elata | 2.240 | |
| SRR5643525 | five period of Gastrodia elata | 0.970 | |
| SRR5643528 | five period of Gastrodia elata | 0.460 | |
| SRR5643658 | five period of Gastrodia elata | 0.280 | |
| SRR5643659 | five period of Gastrodia elata | 3.320 | |
| SRR5643660 | five period of Gastrodia elata | 3.910 | |
| SRR5643661 | five period of Gastrodia elata | 4.600 | |
| SRR5643662 | five period of Gastrodia elata | 3.740 | |
| SRR5643663 | five period of Gastrodia elata | 2.760 | |
| SRR5643664 | five period of Gastrodia elata | 2.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.820 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.810 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.430 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.970 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.970 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.03 |
| Juven | Juvenile tuber | 3.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.23 | |
| Mother_Juven | Mother tuber of Juvenile | 1.61 |