Gene detail

Detail information of GWHGAAEX003778/evm.TU.scaffold_14.70

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	2.00E-14	FOG: Predicted E3 ubiquitin ligase
nr	gi\|308051819\|gb\|ADO00337.1\|	7.57E-24	RING protein [Elaeis guineensis]
Swissprot	tr\|O22755\|ATL44_ARATH	9.00E-10	RING-H2 finger protein ATL44
trEMBL	tr\|E3SER9\|E3SER9_ELAGV	3.00E-24	RING protein {ECO:0000313\|EMBL:ADO00337.1}
TAIR	AT1G49850	2.00E-14	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	1994987	2018581	+

Transcript Sequence
>GWHTAAEX003778 GTCGGGTTGAATGCCATAGCAATACTTTATGTTTATTGACTTTTGGAGGGTTTTCATCAATGCAATCTGAACCGTCAAATAAAATATCTTTGATATCGAAGGGCCTTTGTACCGTCGGACCGAGATTCAAAACCGAGATCAACGTGCCCTAGGATTCCTTTTATCTGTCAAGGTCCCTCCGTAAGCGAAGTCCACTTCACCAACTGTCTAAATACGCAGATTTGCGCATCGTCTCGCGATCTCCGTCGTCGTCGTCTTCTCCTTCCACTTCTATTTCATCCTCCTCTGCTCTCTCTCTCTCTCTCTCTGGTGAGAACTGTGGCAAAGAAAATAGAGAGCAGATAGCTGCATGACTGGTGCTCTTCAGCTACTGTACATATGGAGGTCCCCAGCTCGCCGAATTCACGAACCGATCACGGTGCTTGAGAATGATCACCTCAACACGGAACTGGATGCGCGGCGGAGCTTGAGAGATTGCCGCCATGGCCGTCGAGGAGAAGACGGCGATCCCTCACGATGCTCCCATTCTAATGTCCGGCATCCCAAGACTTGCCGCTCAAATATGAATCGCGAACTGCTAGGAAGGTCGAGCCGTCGTGGCAGCGGCCGCGGATATCTTGGACCTGAAAGCAGCAGCAATTGCGGCGTGTCTAATAGTGCGCTAACTCGATTGGGACTAACCAGAGAGGACCAGCTTCCTTTTGCCGTACAAGAGGCCAGAAAAAGGCTTTTAGAGAGGCTAAAATGCATTTCCCTAACGTCAGATACCAGCAGGAGGGATGAACCATCATCACCTGACAATGGTTCCCGCCTCAGCAACTCAAATTTCAATGTTGAGTACTCAGTGGGAGCACGATATCCGCTCTCATTCGGCGCGCTTAACACGAAGAAAGTTCCGTCGCTCTGCTGGGACGCTTTCTGTGCCGCGAATGGAGAGACTTCCAGGAGGCCCGATGGAGGAGACCTGCCGGAATGCAGCATATGTTTGGAGGGATTTGAGGATGGGAGCCGTCTCATTAAACTGCACTGCAATCACAAGTTCCACCCGGCCTGCCTTCAGCCGTGGGTCATGTCCTCCGGGGACTGCCCCCTTTGCAGGGCACAGATATAACAATATTCCGGGATAGTCCAAAAGATGGCAAAATATGACACTGCCGTCTGTGTGAAAATAGATGTGCTTTTAAGAAGGCGAGATTTTTGGATCTGCCAGACATCTAACACTTACACTCTCCAGCGATATGATGTGTAATTGCAATGATTAGAAGCAGCCAGCCTTAATGCCTTAAAAGTAAAAGCGAGTATCACATCAGTTTAAACACTAAAGCTGTCATCACCATTGATGGATGGAGTAGGACCAATGAGATGCCACCTATTTTTGCCTAAAAATGACACTTGAAACTGTATTCGAGCAAGTAAACTTACTTTGTGCTTATAGTAGATAATATAAGTAGTAGTTGGTAATCTCATCACACCATGACATCTGGTCTCGCTGAGATTTGGTCCTACTCT

Network for GWHGAAEX003778

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	208	250	2.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.090
SRP064423	SRR2545915	Juvenile tuber	5.550
SRP108465	SRR5643513	five period of Gastrodia elata	20.190
	SRR5643514	five period of Gastrodia elata	18.870
	SRR5643515	five period of Gastrodia elata	15.730
	SRR5643524	five period of Gastrodia elata	20.890
	SRR5643525	five period of Gastrodia elata	9.740
	SRR5643528	five period of Gastrodia elata	8.350
	SRR5643658	five period of Gastrodia elata	6.120
	SRR5643659	five period of Gastrodia elata	6.720
	SRR5643660	five period of Gastrodia elata	6.450
	SRR5643661	five period of Gastrodia elata	5.130
	SRR5643662	five period of Gastrodia elata	5.180
	SRR5643663	five period of Gastrodia elata	3.520
	SRR5643664	five period of Gastrodia elata	3.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	28.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	36.850
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	38.720
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	50.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	48.600
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	48.600
SRP279888	Gastro	Gastrodia elata tuber	10.12
	Juven	Juvenile tuber	17.20
	Mother_Gastro	Mother tuber of Gastrodia elata	20.75
	Mother_Juven	Mother tuber of Juvenile	15.93