Gene detail

Detail information of GWHGAAEX003789/evm.TU.scaffold_14.88

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|325109885\|ref\|YP_004270953.1\|	3.00E-17	serine/threonine protein kinase [Planctomyces brasiliensis DSM 5305]
KOG	KOG0668	0	Casein kinase II, alpha subunit
nr	gi\|225438980\|ref\|XP_002284333.1\|	0	PREDICTED: casein kinase II subunit alpha [Vitis vinifera]
Swissprot	tr\|O64816\|CSK2P_ARATH	0	Casein kinase II subunit alpha, chloroplastic (Precursor)
trEMBL	tr\|D7TT82\|D7TT82_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI33704.3}
TAIR	AT2G23070	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	2493164	2522106	-

Transcript Sequence
>GWHTAAEX003789 GTTTTGAATCATTTCTCTTTTCTCTCCATGCCCAATATCGAATTACAGCGATGGCGTCGCCGCCGTCAAAATCTCTCGTTTCCTGCCTATCCGTCTTTAAATATTTCACGGTCTCGCACTCTTCTTGGTCCCTAAATCCCCGCCTCCCTCTCACCCCCAGTCATTTTTCTAAGTTTTTCCGCGGCATCCATCTGTTCTCCGGCGAGAGCACTCGCCGTCCATCTGCCTCCGCAGCCTCAGCAATGGCGCACAGGATTGGAAAAGCCGTTAGGCGGCCCGGCGCCGCCTCCAAAGCTAAGGTTTATGCCGATATCAACGTATCTCGCCCTAAGGAGTACTGGGATTACGAATCTGTCACCGTTCAGTGGGGGGATCAGGAGGAGTACGAAGTTGTTCGGAAGGTGGGGAGAGGGAAATACAGCGAAGTTTTCGAGGGGGTGCACTGCACGGACAGTCAACCCTGCATTATTAAGATCCTGAAACCCGTGAAGAAGAAGAAGATAAAACGGGAGATAAAGATACTGCAGAACCTTTGTGGTGGACCAAATATTATTAAATTGCTAGACATTGTTAGGGACCAGCAATCGAAGACACCCAGTCTCATTTTTGAGTATGTCAATAATACAGATTTCAGAGTGCTTTATCCAACTTTAACGGACTATGATACACGATACTACATACACGAGCTTTTGAAGGCCCTGGAACATTGTCACTCTCAAGGCATCATGCATCGAGATGTCAAGCCACATAATGTCATGATTGATCATGAACAACGGAAGCTTCGTCTTATCGACTGGGGTTTAGCAGAATTCTATCATCCTGGAAAAGAGTATAATGTTAGAGTTGCTTCAAGGTACTTTAAAGGTCCAGAACTGCTTGTGGATTTGCAAGACTATGATTATTCGTTGGACATGTGGAGCCTTGGATGCATGTTTGCTGGGATGATATTTCGCAAGGAACCATTCTTCTATGGGCATGATAACTATGATCAGTTGGTAAAAATTGCAAAGGTTCTTGGAACTGAAGAATTGAATTCATATCTGAATAAGTATCGCCTGGAGCTTGATCCGCAGCTTGCCGCACTTGTTGGAAGGCATAGCAGAAAGCCTTGGGCTAGGTTTATCAATGATGATAACCAGAATGTTGCCGTTCCTGAGGCTGTTGATTTTTTGGACAAATTGCTCCGCTATGATCACCAAGAGAGGCTAACTGCTAAAGAGGCAATGGCCCATCCTTATTTCAACCCTGTGAAGGGTGCTGAGAGCAACAGCAGAAACAGGGCATAATAATAGCAGCTTGGTATTTTAAGCCTGTTTAATCTACTTGTATACTCTTTATTGCTTACTTTTTGCGTTCTTATAATTTTTCCATCCGTTCCTATGATTCAAATTTATCTTCTGTGTGAGACTGACTGGAAATTATTGTATTGGTTGGACAATCTTAAACCCTCTGATAAAAGAGGAATATGGGTTTAGGCTTATGATTGTTTCAAACAAAGATCGCTAGATTGGGTCACCACTAACTGTTGATCGACAGCGATCAGTTAAAAGCACTTAGTATTGAGTTTGAGCATTCTATTTCTCTTATCTATACTTCCATTATTTTTCTCAGTGTTGAAAATGTCGAATTCTTAGCATTCCATAAGTATGCTACCATCTAAATAATTTAACATATGATGAGGTATCGTATTCATACATATACTGGGTATTAATGACATCACTTTTTGGTATGTTTGTATAGACAGCTGAAACTTGTTATAATAATGATGATGACGAGCCATGGAATCTTGGCGACTGCCAAATTCAACAGAAAATGCTGCTGGTTTTATGCTACCGATTGAAAATAGTAAATTCATCTCTTGGCTTTTTCTGGGCATTGCGCTGAGGTCACTCGTTGGTTTAATTAAGTTCAAGTAAACTAAGTGCTATTTTTGTTGTCTTTTGGTCATATAATAGGCGGGTGCGATTGCGACTCCTGCTGTACTTTTATTTCTATTTGAAAAATAAAATGTTATTTGGCTCCCAAGTTGCTCTCATAAATTAGGATTTATATTTAAAATATAACTTATTTGTAGCTTTTATAGGCAAAAATGAATTCAATACGGTTTAGGGGATATTTGGGAGTTGTGTATCAAAATTTTATAAATA

Network for GWHGAAEX003789

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	112	397	1.20E-64

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_CK2

KEGG pathway

KO	Enzyme	pathway	mapID
K03097	CSNK2A	Ribosome biogenesis in eukaryotes	map03008
		Wnt signaling pathway	map04310
		NF-kappa B signaling pathway	map04064
		Mitophagy - animal	map04137
		Mitophagy - yeast	map04139
		Adherens junction	map04520
		Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	73.500
SRP064423	SRR2545915	Juvenile tuber	54.350
SRP108465	SRR5643513	five period of Gastrodia elata	24.340
	SRR5643514	five period of Gastrodia elata	24.990
	SRR5643515	five period of Gastrodia elata	24.870
	SRR5643524	five period of Gastrodia elata	25.750
	SRR5643525	five period of Gastrodia elata	35.720
	SRR5643528	five period of Gastrodia elata	36.390
	SRR5643658	five period of Gastrodia elata	35.260
	SRR5643659	five period of Gastrodia elata	26.310
	SRR5643660	five period of Gastrodia elata	30.580
	SRR5643661	five period of Gastrodia elata	28.660
	SRR5643662	five period of Gastrodia elata	28.570
	SRR5643663	five period of Gastrodia elata	29.500
	SRR5643664	five period of Gastrodia elata	28.780
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.640
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	34.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.200
SRP279888	Gastro	Gastrodia elata tuber	27.47
	Juven	Juvenile tuber	29.30
	Mother_Gastro	Mother tuber of Gastrodia elata	22.39
	Mother_Juven	Mother tuber of Juvenile	23.23