Gene detail

Detail information of GWHGAAEX003790/evm.TU.scaffold_14.89

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743875702\|ref\|XP_010907392.1\|	PREDICTED: BTB/POZ domain-containing protein NPY4-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|O80970\|NPY2_ARATH	BTB/POZ domain-containing protein NPY2
trEMBL	tr\|A0A096UQF1\|A0A096UQF1_WHEAT	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_4AL_A8188635C.2}
TAIR	AT2G14820	Phototropic-responsive NPH3 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	2564461	2572306	-

Transcript Sequence
>GWHTAAEX003790 AAACTCAGTTGAATTGACAGCCCCATTATCTGTCGGTTTTTTGTTTAATTAATTCCTTTTGCTCCTTTTTTTCCTCTCCCTGGCTTCGCATATAAAGCTTGTGGATTGGCAGCGCGGAGCGGGATGCTCATGGCTCGAGTGATACTTACAGGGCAACTGGAACGGTGGTAATGCGATAACCGTTAATGGAGTTGGGCTGACGGAAGCAAACAAGTTCGGATTTAATAATAAATTGGAGCTTGGATTTTGTGCTTGAAGGCATACTGCTTCTTCCAGATTATTTACGAACATAGACGCTTTCTACTGGGTATAATAGGCCCAAATTGGCTCCGGGTTTTGTTGGTTTTGCCTCTGGCCGGGGAAACACAACGCTTGCCACTTTGACTCTTGAAACCCTCAATTCCAATGCCTTTTTCTTGAGTGGAATTCACATTCTCAACTTGATAAGATCCCACATATAAGATTTCTTACTCTTTTAATTTTTTTCTGAGCTAAAGTGGTGAGGCTTTTGAGGTCTGTATTCGAGAGGAAGTTGGCAAATTTCTTACAAGATGAAGTATATGAAGCTTGGATCAAAACCTGACATTTTTCAATCGGATGGGGACAATGTCAGGTTTGTGGCCACCGAACTGCCAACAGACATCATTGTTAATGTGGGTGACATGAAGTTCTTTCTCCACAAGTTTCCCCTTTTGTCCAAGAGTCTTCACGTACAGAGGTTGGTCAGCACCACAAGTGATGAAAGCAATGATGAGATTGACATTCCTGACTTCCCCGGTGGTCCTGCTGCATTCGAAATTTGTGCAAAGTTTTGTTATGGCATGATTGTCACCCTCAATGCTTACAATGTTATCGCAGCTCGCTGTGCAGCAGAATATCTTGTAATGCATGAATCTGTTGATAGAGGGAACCTCATTTACAAGATTGATGTTTTTCTCAGTTCTAGTATATTTCGCGCCTGGAAAGATTCAATCATAGTGCTCCAAACTGCCAATTCCTTGCAACCTTGGTCTGAAGACCTCAAACTGGTTAGCCACTGCATAGACTCAATAGCTTCCAAAGCTTCTATTGATCCTGAAGAAGTAGAATGGTCATACACATATAATAGAAAAAAACTTTCACTAGAAAATGATTTAGACACACATTGGAATGGTGTAATGAAGCAACAATCTGTTCCCAAAGACTGGTGGGTTGAGGATCTCTGTGAACTTGAAATGGACTCCTATAAACGAGTTTTATTGACCATAAAAACCAGGGGTAGAGTGCCTGGTGAAGTTATTGGAGAAGCTTTAAAAGCTTATGCTTACATAAATTTACCGGGCTTCACCAAAACCACTGTAATAAATGGAGAAGATTTTATGAAGGGCCGCACTTTACTGGAAACCATTGTAGAGTTATTTCCTACCAAGAGAGGGTCGGTATCATGCAGTTTCCTTTTGAAACTTCTGAGATCAGCAAGCTTCCTGGATTGCAGTGAAAACTGCAAGAAAGAATTGATCGAGAGAGCTGGACAGCAGTTGGGGGAAGCCTCAGTAGCTGATTTATTGATCCCTGCCCCAACAGGAGAGAGTACCTTATATGACATTGATTTGATTTTGAATGTCTTGGAAGAGTTCTTAATGCATCAGCATAACTGTGTTCGAAGAAGCTTGTCGACCTCAGGAGATATTCAGGAAACTATGAGTTCTAGCTCAATGACTGGCAGCTCAATGGTATCTGTTGCCAAACTGATTGATGGGTATCTTGCTGAAGCAGCCAAAGACCCTAATCTTCCTCTTTCAAAGTTTGTTGAAATAGGTTATTTGATGTCAGGTTTGTCACGACCAGTTCATGATGGCATCTATTTTGCCATTGATACGTTCTTAAAGGAGCACCCAAATCTTACAAAGTTGGAGAAGAAGAAGATATGCAGTCTTATGGACTGCATGAAGCTGTCGCCAGATGCATGCATGCATGCTGTACAAAATGACCGACTTCCCCTTAGAGTAGTTGTGCAGGTCCTCTTTTTCGAGCAGTTGAGATATTCTTCCTTGACCAGCAGCAGGACTCTTCTACAACATGGAACCGCTCAATCACTCGCATCTCAAGAAAACAGTGCTTCCTATGGAAATTCAAGATCGGCCTTAATGATCACTAATACTAGGAGCGAAAGGGATGAAGTCCGCACTACTGGAGACATCAGCTTGACTAAAGCCATGCAGCTATCCGGTCTAGGAGTAGAAAGTGAAAAGATCAGCAGCAGTGTTGGTGCGACAACGAATGGGGATGATAAGGGTGGCAGAAAAGTGAAATCTGCTCTGATGCCTAATAGAATGTTGAGCAAGTTGTGGTCGGGGAAGGTGCATGGTGGAGAGAACAGCAGTTCTGACACATCAGATGGCCCTGGATCAATCATTCCCGATGAGGCAAAGTCCACGACTTCAAGGAACATGAGGAGTGGCTGAAGATTCTTTGAGGTAGCGCAGGGGGATTACTTACAAGGTAAAAGGCCAATTCTGATTATGATGGAGGTATATATATGTTTCATCAGTTTACTGTTGTGCACATTGGGCAGAAATTTTTGCTGTTATATGGATTTGAGTGAGAAAGCTGTATTTTGATTTAAGTGATTCATCAAGTTTTTGTAACTCCTATTAGTGCGCTGTTTTTAGTTATTTATTTCTTTTGGGTTGTTAAGATGTCTATTTGAATAACATTGTTTTATGTAATAATTAGTTTATGAATATGAATAAAAATTGAAATGTATGTCTTTTTATGTC

Network for GWHGAAEX003790

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03000.13	NPH3	211	466	2.70E-84

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.980
SRP064423	SRR2545915	Juvenile tuber	39.460
SRP108465	SRR5643513	five period of Gastrodia elata	20.010
	SRR5643514	five period of Gastrodia elata	14.180
	SRR5643515	five period of Gastrodia elata	12.460
	SRR5643524	five period of Gastrodia elata	15.360
	SRR5643525	five period of Gastrodia elata	16.580
	SRR5643528	five period of Gastrodia elata	12.240
	SRR5643658	five period of Gastrodia elata	28.430
	SRR5643659	five period of Gastrodia elata	18.890
	SRR5643660	five period of Gastrodia elata	21.310
	SRR5643661	five period of Gastrodia elata	16.070
	SRR5643662	five period of Gastrodia elata	18.960
	SRR5643663	five period of Gastrodia elata	14.250
	SRR5643664	five period of Gastrodia elata	21.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.900
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	20.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.430
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.440
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.670
SRP279888	Gastro	Gastrodia elata tuber	36.98
	Juven	Juvenile tuber	10.85
	Mother_Gastro	Mother tuber of Gastrodia elata	18.75
	Mother_Juven	Mother tuber of Juvenile	8.98