Gene detail

Detail information of GWHGAAEX003794/evm.TU.scaffold_14.93

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|586723356\|ref\|XP_006849331.1\|	0	hypothetical protein AMTR_s00164p00040330 [Amborella trichopoda]
Swissprot	tr\|Q8LPQ9\|FPA_ARATH	1.00E-07	Flowering time control protein FPA
trEMBL	tr\|W1PLL8\|W1PLL8_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN10912.1}
TAIR	AT1G27750_1	5.00E-74	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	2706016	2751999	+

Transcript Sequence
>GWHTAAEX003794 ACGAAGTGAGTAAAAAAGAAAGGCTCAGCCTATTAACTCAAAACGGACCTATTGTAGGAAGAAAAACCCTTCTTTTTGCTCCGACTCCGCCATTTTTGAAGCCTTATGGCGTCGCTGGCCGAGCAGCAGCCCGTCAAGAAACGCAAGCTTTACGAGCTCTCAACGGAGCCTTCGCCTGTAGGCACTGTATCGAGGCCTATGGTACTCCTCCCGCTCTCGCAGGAAGAGATCATCCGGCGGCGGAGGAACAAGGAGGAGATCCGAAAGCTCTACGAATGCTACAAGCGGATTAAATTCTTCGTTTCCCGGAAGGATCCTCGCCTCATGGCTGACTTCGAGCAGGCATACCTTTCCCTCATCACCGCCTCAAGAGGTTGCACAAGCGTTCAACGGATTGTGGCCGAACTCATTCCACGTTATGCAGCATTTTGCCCTACTGCCTTGGAAGCTGCTGCAAAAGTTTCCATCAACATGTATAACTGGAGCTTAGCTATACTAAAGAGAGGTGAAGATCTAGACAGTGTTGCATATCAAACTGCTAAGACATGCATTTTTGGATTGGTTGATATATGTTGCACAGCTTCGTACGAAGCTCCGACATCATCTGTAATTCGTGGCATATGTGCAGCAGTTTTTCAAAATGTTCTGACCTTTTTCATTTCATGCTTTGAGGGAAAGGGGATATATGACATTGGAAGCAGAGAGATTTTAAAGCTTCAAGAGCCCGTTGAAAATTTTTATGCTTTGAAGCAGGAAAGGGAAAATGATTATGAATCTTCATTAAACAAATTATTTAAGTACGGAGCTCTATGCTTGCTGCGCATATTCTTCTCTTTTCCAAAGAATTTACTTGCAGCGTGTTTTGAACTCATTACTACTAGTGGAGCTGATGCCAATAATAAGCAAGGGAACTATTTTCTTGATCAGGTGACTAGCCCTTTGAAGGCTGGTATTTTATCTCAGTCACTGAATAAGAAGAATGATGGTGCTCCATTATCAATGAACACGCTACAGACTAGCATGGACTATGAAGTATTGGACAAGGCCACCTGTGTGCCAGGTGACATTGCCAATGAAAGCGATTCATGTTCATCTGAAAATTGCTTTATGGGAATGGTAATAAACAGGGAACCATCATTGAAAGGTTGGATACTTGCAAGATATAAAAAGCTTGCTGACTCTTTAAGTGCACACGATACTCTAGAAATATCTTCATTTCTTGAAAAAGTTCTTGGATCTGTACAAGAGTTTGCTAAGGGCACAACATATGAACAGAGTGATGAAGAAAACATCGATTCATCAAATCATATGCACCACTATGCACGTTACACTAAAGCCATCGAGAATGTCAGTGATTTATCCAGGAGGGATCATGCTTTGGAATCACAAGATAACTCTCTTGCAAAGGCCCCAGGTGTAGATTCTATTACTTCTAAAAGCTCGATTCGAAATTCGGTGACTCACAAATCTGTGCACTTATCAGGTACAAATGTTGTCATAGCTGATCAAGTTTTGGTTTGTGAAGGTGAAAGGGCTATACCTGCTAAAAAGCTAGAAGGTAGTAGTTTTGTTAATTCACGTTTGGGGAAGCCACCTATACCTTTGGGATTGACTAGCAACCTGTTTGCCCCTGCAGTCTCTAGGAGCCTTTCAGGTTGCAAAACTGATGCCTCAACTGCTGAAAGCCTTGTTAAAGCTGATGATAAACATGAATCAAATGTTGGTCATGTTTTTTCATCGAGCATTTCAGGTTTTGGAAGTTCATGTAGTATTCCATCTCTTAAACAAATTTTAAATGCACAACATCTTACTTCTGATCATCTTAATCGGTACACTGATGCGGATCCTGCTGCTATGGATGTTTTCGCTGCTACCAAGTTATTATGGTTGGGTTCTCTTGGTTATCATGCTTATGAAAGTTCAGTTAGACAGCAGTTTGAAAACTTTGGTCATCTAGAACAATTTCTCTTTGTTCCTGAAAAGAATTTTGCTTTAGTTGAATATAGGAACCTAATAGATGCTGTTAAAGCACGAGAAGTTATGCAAGGATCATCACAATGGGGTGGCTTTCTTAAAATAAAATTTATTGACTTAGGATTAGGCAGAAGAGGAATTGTCAATGGGGATGCTGTTGGTGATAGTTGCCATGTTTATGTTGGAAAGGTACTGACTCAGTGGAGCAAAGAAGAGATACTCAATGGATTGATAAGAAAAGGAGCTAGGAATCCCCTAGTGATTACTGATCTTACAAGTGAAGGCGCTCTGCTTTTAGAATTTGGAACTGCTGATGAAGCAGCTGCTGTAATAGTACTTATCAGACATTTACGGAATGAGACCAAGTACTGCATGCCATTAAACAACTTTATTTACCCTAAAGATAGGTTGAGGGGCATAGGTGCTTCCTTACATCATGAAGAATGCCACTCCTCTGCAGGAAGCACAAAGGTTGCAGGGTATTTTTCTTCTCATGGTGATCCTCAGACGTCCTATGGTGAACCCATTGCTCGAATCCATTACTCCAATTATTCAACTGCTAAGCCAGAGTGCTTCATGCATGAACTTGCATCTCCAAGAGTCAAGGTTGAGAAATCTGACACCGCTTCATTGAAAGTTCATGAACTGCAACCAAATTGGAGTGTCAAAGGCATTGTAGATACGGTAGATGTGGGATCTAGGAATGCTGAAGAATTTGGAAATATCATATCGCTGAATCTTTCATCATCAGAAACTTTTTCATCTTCGCACATTGCTGATCCAGTGTGGCCTTACAAGAACTCGGAGAGTGGAGCACAGCTATTAGCCCATGGAATCATTCAATATGCTCATAGTGTCTCTGTGATACCTCCACCAACACATTCCTCCTTATCCATTCACCCTATATATCCCCCAAATAATAATTGGGACAATCCTTCAAACAACTCTTCTTTCATGCTTTCCCAGGATAGGCGACATTTTAGTTCTCACACCCCTCTGCCTTTTATTCCCTCCTCAATAACTCCTCTTTCTCAAATTGCTACTGGTTCTATCCAAAGATTTGAACAAATAGTTAATGCACCAAATATACCAACTCCATTACCTTCTTCTCCACCACCCCTGCCTCCCTCTCAACCTCCTTCCATTCCTCCTCCCCCAACATCCCCTCCCCCCATCTCACAATCAATTCACGAGACTACTAAATATCATTTTGGAAGGCCACCTGTGCAGCATCAGTGGCAAGGTACTCTTTCAAAAAGTGGGGTTCACTACTGCACACTATATGCAACTAGGGAGGATTCGCATACTTGCAAATATACAAGTGCTACATCTGAACCTGCAGAATGGCCTACAAGATTAGATGTTACAAAAAGGACCGATTATCGTCATGTGATGGCTACATTTGGCAATACTCCATTACATAGAAGAGAGGTTTGTCGGCTGCTGCCGTCTACCACAAGTGATCACAAAGGATTTAATGATTTCATATCATATTTGAAGCAAAGGGAATGTGCTGGTGTGATCAAGATTCCGGCAGTGAAGGCGATGTGGGCAAGGCTGCTTTTCATCCTCCCTTATTCCCTTGATTTTTGCTCTTTGCTCGGGATTGCAGGTCACCCAGTTGAGTGCCTGATTGCTTTGGTTTTACCCAAGGACTCGAATTTAGACTCGGTATAACTACCCTTATTATTATGATAATCATCCTTATCATATTAGTAATATCATTATGTTCTTCGATATGCGGCTCCTTTCTTCGTTTTCATTCATTTTAAAGATAAACAGAGTTTCATGCTCTTGGGGATTAAAAGAATATGTTGATTTGGAACAAAACAGGTATTCAAGTTAGAGAACTATGTAGTTTTTAGAATCCTCTTTTACTTTTGGATATTTAAACCTGTACATATGTATGTTATTAAACCTTCATTGCGCCTAAGGCCCCATTTGGGGCTGCTTTTTGGTTATTGCAATTTATAGTCATTTTTGGATTGGTATCTATTGTTTTGGGTATATAAGAAATCCTTTCAGAATGCAAATGTTTG

Network for GWHGAAEX003794

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	593	649	1.50E-05
PF07744.12	SPOC	1033	1154	4.20E-14

Protein Sequence

>GWHPAAEX003794
MASLAEQQPVKKRKLYELSTEPSPVGTVSRPMVLLPLSQEEIIRRRRNKEEIRKLYECYKRIKFFVSRKDPRLMADFEQAYLSLITASRGCTSVQRIVAELIPRYAAFCPTALEAAAKVSINMYNWSLAILKRGEDLDSVAYQTAKTCIFGLVDICCTASYEAPTSSVIRGICAAVFQNVLTFFISCFEGKGIYDIGSREILKLQEPVENFYALKQERENDYESSLNKLFKYGALCLLRIFFSFPKNLLAACFELITTSGADANNKQGNYFLDQVTSPLKAGILSQSLNKKNDGAPLSMNTLQTSMDYEVLDKATCVPGDIANESDSCSSENCFMGMVINREPSLKGWILARYKKLADSLSAHDTLEISSFLEKVLGSVQEFAKGTTYEQSDEENIDSSNHMHHYARYTKAIENVSDLSRRDHALESQDNSLAKAPGVDSITSKSSIRNSVTHKSVHLSGTNVVIADQVLVCEGERAIPAKKLEGSSFVNSRLGKPPIPLGLTSNLFAPAVSRSLSGCKTDASTAESLVKADDKHESNVGHVFSSSISGFGSSCSIPSLKQILNAQHLTSDHLNRYTDADPAAMDVFAATKLLWLGSLGYHAYESSVRQQFENFGHLEQFLFVPEKNFALVEYRNLIDAVKAREVMQGSSQWGGFLKIKFIDLGLGRRGIVNGDAVGDSCHVYVGKVLTQWSKEEILNGLIRKGARNPLVITDLTSEGALLLEFGTADEAAAVIVLIRHLRNETKYCMPLNNFIYPKDRLRGIGASLHHEECHSSAGSTKVAGYFSSHGDPQTSYGEPIARIHYSNYSTAKPECFMHELASPRVKVEKSDTASLKVHELQPNWSVKGIVDTVDVGSRNAEEFGNIISLNLSSSETFSSSHIADPVWPYKNSESGAQLLAHGIIQYAHSVSVIPPPTHSSLSIHPIYPPNNNWDNPSNNSSFMLSQDRRHFSSHTPLPFIPSSITPLSQIATGSIQRFEQIVNAPNIPTPLPSSPPPLPPSQPPSIPPPPTSPPPISQSIHETTKYHFGRPPVQHQWQGTLSKSGVHYCTLYATREDSHTCKYTSATSEPAEWPTRLDVTKRTDYRHVMATFGNTPLHRREVCRLLPSTTSDHKGFNDFISYLKQRECAGVIKIPAVKAMWARLLFILPYSLDFCSLLGIAGHPVECLIALVLPKDSNLDSV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.100
SRP064423	SRR2545915	Juvenile tuber	18.570
SRP108465	SRR5643513	five period of Gastrodia elata	11.340
	SRR5643514	five period of Gastrodia elata	11.280
	SRR5643515	five period of Gastrodia elata	12.320
	SRR5643524	five period of Gastrodia elata	12.240
	SRR5643525	five period of Gastrodia elata	9.650
	SRR5643528	five period of Gastrodia elata	10.620
	SRR5643658	five period of Gastrodia elata	10.040
	SRR5643659	five period of Gastrodia elata	9.350
	SRR5643660	five period of Gastrodia elata	9.200
	SRR5643661	five period of Gastrodia elata	9.050
	SRR5643662	five period of Gastrodia elata	7.830
	SRR5643663	five period of Gastrodia elata	8.510
	SRR5643664	five period of Gastrodia elata	8.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.210
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	12.560
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.040
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	12.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	12.430
SRP279888	Gastro	Gastrodia elata tuber	13.53
	Juven	Juvenile tuber	14.95
	Mother_Gastro	Mother tuber of Gastrodia elata	15.21
	Mother_Juven	Mother tuber of Juvenile	21.89