Gene detail

Detail information of GWHGAAEX003795/evm.TU.scaffold_14.94

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0656	3.00E-36	G1/S-specific cyclin D
nr	gi\|743871381\|ref\|XP_010906285.1\|	8.18E-74	PREDICTED: cyclin-D5-1-like [Elaeis guineensis]
Swissprot	tr\|Q10QA2\|CCD53_ORYSJ	7.00E-43	Cyclin-D5-3
trEMBL	tr\|A0A061FFS1\|A0A061FFS1_THECC	3.00E-74	D5-type cyclin, putative {ECO:0000313\|EMBL:EOY15738.1}
TAIR	AT1G70210	3.00E-36	CYCLIN D1;1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	2757056	2759694	+

Transcript Sequence
>GWHTAAEX003795 CTCACATCTTTGATCCTCAGCCGTCAGATCAGAATCAAAGGTTTCAGGTACAGAATAGCCAAGGCTTCATTTGGGTAATATAAATGGGGTTCTTTGTTTGGAACTTGTCGAAGGAAAGAACAATGGAGGACTCCTCTGATTGCTCTTCTCCACTGTCCACACTTTTCTGCCATGAAGAACAAGATAGCTCTTTTCATTCAGATGCCGAAGAGGATCACTACATAGAGATACTAGTTTCCAAAGAGACCAATCCTGACTGCCCAAATATGGAGTTTCTTTACTGCAAATGGCTTCGTCGAAGAGCAATCCAATGGTTTCTTAAAATGAGGCAATGCTTTGGATTCAGCGCACAAACTGTGTACCATGCTGTGTGTTATTTCGATCGGTTCTTGATCCGGAGAACCATTGATAAAGAGAAGTCTTGGGCTCTTCAGCTATTAGCATTAGCATGTCTATCTCTAGCAGCAAAAATGGAGGAAGTTATTTCACCTCCATTGATGGACTATCAAACAGAACAATGCTGTTTTGATTCCAATACTATTCAAAGAATGGAGCTTCTTGTCTTGAGCACATTGGAGTGGCGCATGGGCTCAGTGACTCCATTTACTTATATTAAGTATTTCAGCAACAAGTTCTATGGCAGCAACTTGCCAAGAGAGTTGCTCTCAAAATCCATTGGCTGTATATTTTCGATCCTTAAAGAGATCAACCTTGTCGAATTTAGAGCTTCAGTGATTGCTGCTGCTGCTGTTCTTGCTGCCATGGATCAGAAGCTAACAAGAAAAACACTAGAATCCAAAATGAAGTCAGTTCCCTATTCCGGACTCATGGAAACAGAACTTGTCTATTCATGCTACAATCTAATGACTTGGGAATCGAAGAAGAAACCATTAGAATTAAATACTTTGGATTCTTACAAGTTGCTCGAATCCAACATCGATGATAACTTGGCTGATTTAAGTGAAATTTCCTCACTTTCTGATAGCAGCAATAAGAGGAGGAGATTGCAAAATCCCCAAATTGATCAAAGTTCGCTTTACACAGACTTTCATTTGTGAATAATGTTGGAGTTATGATTCTGGTGCAGCTTTTTTTAGCACAATATGAGTCCTGTTTGCTTTTTGTTTTGAGGATGCTTTAGTTTTGAGAATAGTATAAAAAGGTAGAAGAAGAAAGCTGAAAGGCCTATAAAGATTGAAGTGATTGTGTTGCAAATGGCCTTTTTCTTATCATTCATTGATGAGTTTTCCTTTGAAATAGTGGGCGGACTCATTGCTTTGTTGAAATGCTATGGATCTTCAAACATAAAGAAGTAAATTATAGATGAGATGGCTTACCCAAGTGCAAAAATGATCTTTTAGTGCAATTCAGTTGAATAAGGGCCACACAGCTTCTCTTTAGATATGTTGCCCTTTTCCCAGTCATCAAAGCAAAGCTTTTATTTAGTTTTGAAGAAACATAGCATTTCTCATTTCATGATAAAGGTGCTTTGGATGCCCCCTTTTTTTCTAGGAAGGATGAAAATTTTTATCAGAGTGTTTTGGGTGTGCTTTGTTCACTTTGGTGAAGCTTTTAAGTGTAAAGATTGATTTCATTTCATTTCATTTGGATCTTCTTGAAGTGTAAGTGGCGCATCATGTGCTCTCTTTTAAACATTAGATCTGAAATGTGAATTTTATTGTTTTTGTTTAACTTTCTCTCACCTCCTACAATTCGTGTAATGAAATCTTGATTATTGCTGTAAAGATTATTGGGTTAAACTTTTTTATGATATAAATGCTGAAGAATCAAATGGTCTGTGATTTTTCTGA

Network for GWHGAAEX003795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.22	Cyclin_N	67	168	1.60E-24
PF02984.18	Cyclin_C	171	262	2.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.300
SRP064423	SRR2545915	Juvenile tuber	1.440
SRP108465	SRR5643513	five period of Gastrodia elata	2.030
	SRR5643514	five period of Gastrodia elata	2.010
	SRR5643515	five period of Gastrodia elata	0.250
	SRR5643524	five period of Gastrodia elata	0.660
	SRR5643525	five period of Gastrodia elata	0.130
	SRR5643528	five period of Gastrodia elata	0.040
	SRR5643658	five period of Gastrodia elata	0.000
	SRR5643659	five period of Gastrodia elata	0.220
	SRR5643660	five period of Gastrodia elata	0.160
	SRR5643661	five period of Gastrodia elata	0.240
	SRR5643662	five period of Gastrodia elata	0.040
	SRR5643663	five period of Gastrodia elata	0.030
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.770
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.750
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.940
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.500
SRP279888	Gastro	Gastrodia elata tuber	0.14
	Juven	Juvenile tuber	0.03
	Mother_Gastro	Mother tuber of Gastrodia elata	0.09
	Mother_Juven	Mother tuber of Juvenile	0.41