Detail information of GWHGAAEX003796/evm.TU.scaffold_14.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|389860673|ref|YP_006362913.1| | 4.00E-06 | 50S ribosomal protein L34e [Thermogladius cellulolyticus 1633] |
| KOG | KOG1790 | 2.00E-49 | 60s ribosomal protein L34 |
| nr | gi|743848948|ref|XP_010939495.1| | 2.23E-51 | PREDICTED: 60S ribosomal protein L34 [Elaeis guineensis] |
| Swissprot | tr|P41098|RL34_TOBAC | 1.00E-51 | 60S ribosomal protein L34 |
| trEMBL | tr|Q207T4|Q207T4_GYMCO | 8.00E-52 | Ribosomal protein {ECO:0000313|EMBL:ABD66516.1} |
| TAIR | AT1G26880 | 2.00E-49 | Ribosomal protein L34e superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 2795322 | 2795901 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003796
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01199.17 | Ribosomal_L34e | 2 | 76 | 1.50E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02915 | RP-L34e, RPL34 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.500 |
| SRR2545915 | Juvenile tuber | 36.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 49.940 |
| SRR5643514 | five period of Gastrodia elata | 50.820 | |
| SRR5643515 | five period of Gastrodia elata | 46.080 | |
| SRR5643524 | five period of Gastrodia elata | 47.090 | |
| SRR5643525 | five period of Gastrodia elata | 22.200 | |
| SRR5643528 | five period of Gastrodia elata | 33.860 | |
| SRR5643658 | five period of Gastrodia elata | 18.480 | |
| SRR5643659 | five period of Gastrodia elata | 59.670 | |
| SRR5643660 | five period of Gastrodia elata | 61.890 | |
| SRR5643661 | five period of Gastrodia elata | 67.700 | |
| SRR5643662 | five period of Gastrodia elata | 50.700 | |
| SRR5643663 | five period of Gastrodia elata | 51.250 | |
| SRR5643664 | five period of Gastrodia elata | 41.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.940 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 54.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 31.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 34.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 63.990 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 54.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 62.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 62.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.98 |
| Juven | Juvenile tuber | 27.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.15 | |
| Mother_Juven | Mother tuber of Juvenile | 10.69 |