Detail information of GWHGAAEX003798/evm.TU.scaffold_14.100_evm.TU.scaffold_14.99
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332292065|ref|YP_004430674.1| | 4.00E-70 | DNA-directed DNA polymerase [Krokinobacter sp. 4H-3-7-5] |
| KOG | KOG2094 | 0 | Predicted DNA damage inducible protein |
| nr | gi|672137685|ref|XP_008792573.1| | 0 | PREDICTED: DNA polymerase kappa [Phoenix dactylifera] |
| Swissprot | tr|Q8RXL1|REV1_ARATH | 1.00E-28 | DNA repair protein REV1 |
| trEMBL | tr|M0SUV3|M0SUV3_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P01740_001} |
| TAIR | AT1G49980 | 0 | DNA/RNA polymerases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 2821482 | 2907980 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003798
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00817.19 | IMS | 103 | 246 | 9.20E-43 |
| PF11798.7 | IMS_HHH | 262 | 293 | 8.20E-06 |
| PF11799.7 | IMS_C | 332 | 437 | 3.10E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03511 | POLK | Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006281 | Biological Process | DNA repair |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0003684 | Molecular Function | damaged DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.020 |
| SRR2545915 | Juvenile tuber | 13.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.320 |
| SRR5643514 | five period of Gastrodia elata | 8.120 | |
| SRR5643515 | five period of Gastrodia elata | 10.300 | |
| SRR5643524 | five period of Gastrodia elata | 8.640 | |
| SRR5643525 | five period of Gastrodia elata | 14.200 | |
| SRR5643528 | five period of Gastrodia elata | 14.260 | |
| SRR5643658 | five period of Gastrodia elata | 15.700 | |
| SRR5643659 | five period of Gastrodia elata | 7.060 | |
| SRR5643660 | five period of Gastrodia elata | 9.870 | |
| SRR5643661 | five period of Gastrodia elata | 8.410 | |
| SRR5643662 | five period of Gastrodia elata | 6.620 | |
| SRR5643663 | five period of Gastrodia elata | 8.510 | |
| SRR5643664 | five period of Gastrodia elata | 7.280 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.280 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.020 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.940 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.96 |
| Juven | Juvenile tuber | 9.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.08 | |
| Mother_Juven | Mother tuber of Juvenile | 13.36 |