Gene detail

Detail information of GWHGAAEX003800/evm.TU.scaffold_14.102

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672137715\|ref\|XP_008792589.1\|	6.60E-118	PREDICTED: uncharacterized protein LOC103709147 [Phoenix dactylifera]
Swissprot	tr\|Q94DH3\|PCL1_ORYSJ	2.00E-14	Transcription factor PCL1
trEMBL	tr\|M0TCR1\|M0TCR1_MUSAM	8.00E-100	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P34680_001}
TAIR	AT2G03500	3.00E-53	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	2950472	2955025	-

Transcript Sequence
>GWHTAAEX003800 TGCCTACGCACCACCTACTCCCTCGGAAAAGAATCTCGCACTAGGACGAGGGTAAAATAGGAATTTAAAAATAAAGTACTCGAAACAGATTCACCCACCGGTTCACCGATTCGAGTTTTCGACACATCCGGTTCGGTACGCGAGGAATCGACCCCGCTTTTCTTTTCCTCATCTTTTCTCCGCACTCACCGGTTCAGTCGATTCCGGTTCATCGAACCGCATATTCTTCTTCCTCTTCTTCTACCTATAAATAAACTGCAGTCATCCCTGCAGCCTTTCCTCTTTAATTTCTTGATCCATGCTGGAAGGAAAAAGGAAAGATTTTTAGTGAGAAAGAGGGGAGATGGGATCGTTAGTGCCTGAGTTAGGTCTCGATTTGAAACTCTTTACTAAGAGAACGATTTTTGGGTGCTTGAATGATGAGGTGACCGCGGGCAGCCGTGCTGCCAAGCTGGAGGATTTTGCTCGAAGGCTAGAAGAGGAAAGGCGAAAGATCGAAGTCTTTAAGCGCGAGCTCCCTCTCTGTATGCTTCTTCTGGCTGAAGTGATCGGCGGATTGAAACTGGAGACGGAGCAATGCCTGAGTGGCTGCGTTATTGAGGAATTTATTCCTGTTGAAATCAGATCGAGTGAAGCTGCGGAGAAGAAAGATGTGGATTTGGAAGATGGGTGCAAGGAGAAGATGGAGTGGATGAGCTCTGCTCAGCTCTGGAGCGATAACTTGGTCTATGAGAAGAAGGCTGAGTCTCTTTCTCTGGAATCCAAGAACGGGGGAGCATTTGTTCCTTTCAAAGCTAAGAAACTGAGCATCCCGTTGCCAGATCTTTCACTGGTGCCTCCTCTGATTGACTCTTCTTGCTCAGCTCCAAACAGAGCTGTTGCAGATGAAGACAATCATAGCTGTGGGATGAGTTCAAAGGGGGTAGCAATATCTTCTTCTTCTGCTGGGAACGACCACATGAGCTTGCAGCCTCAGTATCAGCAAAATTCTCAGAGGAAAGCGCGGCGCTGTTGGTCGCCGGAGCTTCACCGGCGTTTCATCATGGCTCTTCAGCAGCTCGGCGGCGCTCAAGTAGCAACTCCAAAGCAGATCAGAGAATTGATGAAGGTTGACGGGCTGACCAACGATGAAGTGAAAAGTCACTTGCAGAAATATCGATTGCATACTCGAAGAATGCCTAGTTCTTCAGCAAGTCAAGTGCATAGACCAGTTGTTATGGTGGGAGGAGGCTTGTGGGTTTCTCAGGGCCATTGCACAGCCTCTCAACAGAATGCCTCTCAGTCTGAATCGCCGCAAGGTCCCCTTCAGCTGGCTTGTGCCGCCGCTCAGGCTCTTTCTGTGACCGGTGGAGACAGCTGCGATGATGATGGAAAATCAGAAAGCTATAGCTGGAAATAATTTCAAACTCATCTTTGCTGATGCTTCAGGAGCATTTGGCTGCATGTCGGTGTAAATCAATCACTCTAGAGATTTTGGTAAGTTTGTCTCTCACATTGGAGCTAAATGATGTATAGCAAATGATCAAGGATTTTGCAAATATGATAGAAAAGGAGATTGCATGATTCGATTAGCATAACCTAATAATATCGATGCATGAATCCGTAAAAGAAGGAGTATTGTGCTTAGGGGAAGAAAGATGGGGCTGCTAGCCGCCTCTTAAGTTTTTGGGTAGAGATTCAGATTTCGACCCATTTTGTATTCAATTTTCTTATAGGATTGTGTTTATGCTATACTACGACGGGATAGTAGTTTTGTTTTTCCTTGAGGAAGAGATACATATATAAATGTTACTAGTTTTGAGCATGTCTTCTTGTGTTTATATTCTTATTTCACGCCTCTTTTATTCAAACTTCCATTTTTATTGACTTTCTTGAGCTTTGTCTCACAGATATGTGTGCTATTTTGAACCAAGCTTTTGACAATAGTCATCTTTTGAAATGCCTTTGTTTGTTTTAAATCCTAGAATTACCACATTGCTATGATGGCTTTACACTTCCACAGAATCAAGAATGCTTAAACACTGTGCTTCCTTGGCTATTATATCAATTTGATGTCAATATCACTCATTTTTCAATTGTCCTTTATTTGTGTGGATTGATTTTTCATTAAAGATAATCTCACCTTTGTCATGAGAATATATTCTGGTTGTGAACTGACGTGCTTCTCTTCCATCTCATCCTCTGAATTACTCTGAACTATGTTGAAATATCAAGAATCTTGTCTGACATATATTCAGCTAGTTCCTTTAAGAAAGAATTTTTTACTTTGTTACTTGCAACCTTCCTTTTGGTGGAATCACTTTTAAAGAGTAAAGAATCAGCATCATTTATCTTGTGGATCAAATTATCTCGGGGCTACTATTGTAAGGGAAGAAGCTGATTCCATTTATTTTTTCTTACGTTATGTTTGGTTTAAAGGATAATGGTATGAAGTGCATGGATTTTTTGGTTGTTAACTTCCCTACTGTTTGTTTGAAGAGAATGTAAAATATTTGGGTAACTGGAACATGCAAGTCACAAAACAAAGAATTTTGTTTGTAAGAAATTGAAATACTGAGATTTGTTTGGAGCAACTACATTTGCTTAGAGAAAACTTTGCAAAAAGTTATTGCAAATGAAGCTATTGTTATTTGAATGCTCTGTTATCACACTGCTAGGTATGACATTAGCGGTGAACGAAGGTTGGTCAGCAGACAGGCGGATTGAATGGTGAGTTGACAAGCATTAGCAGTGGTGGTGTAGAGCTAGGAAAAAAAAAAAATCTTAGGCTAAAAGCAGTAAAAAGCCAAGTCATTCCTTGGAAACTACTTCCTAAAAATTATTTTCCAAGGGTCTCCTTTCTGAAGAAGCAAACAAAAGTAGCTCCAAAATGAGAGAAATCAGACATAGATGAGTAATAGAAAGTGCAACAGCCCAAAGTTGCCTCAAGCTCACCCTTTATGATTGTCATGCCTCGATAATCAGTATTATGTAAGAGCTCTTTATATGAACCATCACTCTCACACAGATATTTTAAGCACCATCAAGGATTATCATCAAAAGCTTAGTCATATAATGCTTATAGTGTTAAGAATCTTTCTCAACCATACATTTGATATTGTGAAAATATCCCCTTGAGATCGAATAGACACAATTTTAGCATATTAAAAGAGGAGTAACACAGCA

Network for GWHGAAEX003800

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	221	272	3.80E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	40.970
SRP064423	SRR2545915	Juvenile tuber	122.620
SRP108465	SRR5643513	five period of Gastrodia elata	44.230
	SRR5643514	five period of Gastrodia elata	47.990
	SRR5643515	five period of Gastrodia elata	37.370
	SRR5643524	five period of Gastrodia elata	36.730
	SRR5643525	five period of Gastrodia elata	160.570
	SRR5643528	five period of Gastrodia elata	105.280
	SRR5643658	five period of Gastrodia elata	130.560
	SRR5643659	five period of Gastrodia elata	30.750
	SRR5643660	five period of Gastrodia elata	35.660
	SRR5643661	five period of Gastrodia elata	30.130
	SRR5643662	five period of Gastrodia elata	26.730
	SRR5643663	five period of Gastrodia elata	36.350
	SRR5643664	five period of Gastrodia elata	41.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	52.630
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	31.940
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.580
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	43.230
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	49.740
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	49.740
SRP279888	Gastro	Gastrodia elata tuber	73.12
	Juven	Juvenile tuber	62.43
	Mother_Gastro	Mother tuber of Gastrodia elata	59.80
	Mother_Juven	Mother tuber of Juvenile	67.18