Gene detail

Detail information of GWHGAAEX003801/evm.TU.scaffold_14.105

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|337280016\|ref\|YP_004619488.1\|	2.00E-15	hypothetical protein Rta_23710 [Ramlibacter tataouinensis TTB310]
KOG	KOG1946	2.00E-82	RNA polymerase I transcription factor UAF
nr	gi\|743868654\|ref\|XP_010905631.1\|	6.66E-140	PREDICTED: upstream activation factor subunit spp27-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q9SIV5\|C3H19_ARATH	1.00E-06	Zinc finger CCCH domain-containing protein 19
trEMBL	tr\|V4SPM5\|V4SPM5_9ROSI	6.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:ESR39071.1}
TAIR	AT1G49520	2.00E-82	SWIB complex BAF60b domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	3145743	3176874	-

Transcript Sequence
>GWHTAAEX003801 GCCACCTCCCCAACACCATCTTCCTCGCCAGTCTCTCTACAATTGAATCGCTCTTCAACAATATCTCAGACAAGGTCCCCTCCTCCGCTTTTGAAGCACAAGACAGCCCTCGGCGACGCCAGGGGTCTCGCTTACCACCCCCACAGCGGCGCTGGAGCGCCGCATCGAATGAGGAACATTTGCGTCGATGAGTTAGTCGCGCAGAGATTGACTGGTTACCGCCTCGACAAGATTGTGATTCCTTCCGTCGCCGACGAGATAATGGTGATTAAAGGCTGCGCAGTGCGAAAATGTGCAACTCTTTTTATAAGGACTAATATTAGATTAAAAATTAAAATTTACTGATTAAATAAAAATGTTTTATAAATTATATGAATTTATTTTGCTAATTCCGAATTTAATTAAAATTATAAGCGACTAAAAAATATTTCTTAACTATAGTAAGAGGCCGGTGGTGGTATGAATGCAAAACTCCCCTTTCTTACACATTTATTCTGAGAACCAGTACGAGGCTCTAAATACTGAAGAGCAATTCCCCGGAAACCCAAAAATGGTGTCGGAGGCGGAGCTTGTGGAGCGCCTGAGGGATTTTCTGCGGACATCCGACCTCTCGACGACCACAGCGGCGATTGTCCGTCGAAAGCTCGAGGAGTACTTCGGAGTCGAGCTAACGAACATGAAAGTGTTCATCCGGGAGCAAATTGATCTTTTTATAGGCGAATTAAACGAGAAGGAAGAGGATGATGGAGAAGGAGAGGAAGCAAAAGCGGTGGAAGAAGAAGAAGGGAGCGGCGGCGGGGAGGAGGACAATGAGGAGGAGATGGAGGGGAGCGAGGAGGGAGAGGAGGAGAATCCGAGTAATGGCGGAGGCAGCTGTAGGAAGAAGAGTTCAAACAAGCTCACCTTGGAAGTCAAGAAAAGGGGAGGTGGATTTTTAAAGCTTTGCAGTCTTTCACCTCAGCTTCAGGGGTTTGTTGGTGAGCCTGAATTAGCAAGAACTGAGGTGGTCAAGAGGCTCTGGGCCTATATACGGGAAAACAATCTGCAAGATCCAAGCAATAAAAGAAAGATTATATGTGACAAGAGATTGCAAGGCCTTTTCAATGTCAATGCGATTGACATGTTTCAAATGAACAAGGCTTTGTCAAAGCATATATGGCCGTTATCTTCAGATGGCCCAGTGAAGTCACCCAAAGAAAAGTCACAGAAAAAAGCGAGAGAAGATTTGGATGATACTTTACGGAAAAGAAAACGACAAAAAGGTGGGGCTTCGGGTTTCCTTGCACCCCTCCCGCTTTCAGATGCTTTGACAAAGTTTATTGGAACTGGTGAAAATGTATTACCAAGACCTGATGTTGTCAAGAGGATATGGGATTACATAAAACAAAATAATCTACAGGATCCTGCTGATAAGAGGAACATCATATGTGATGATAAGCTTCAGGAGCTTTTCCAAGTCAAGTCGTTCACCGGCTTCACAGTTTCAAAGCTGCTAGTGCCTCACTTTGTTAAGTCAAAAGATTAGAGCCGCCGCCCATTGCAATTTCTGCCATTATCAGGGGGATTTGAGCAATTTTGTTTTTTTTTTTCTTACACCACTGAGCTTCAGCTTCCTCCTTTGTAGGCAGGGAATGGAAATGAAATTTTCTTTTTTTGTTTTATTTCTTTTCATGATAGGAGTAAAGCTGCTGCTATATATAGCAAGTTAAAATGCTCAAATCTCTATCATTTTGTTTTTATTTGGAATTAAATTATTAAATGGCACATTTGCCCTTAATACGTTGCTGCACTGTTTTTGTAAATGTTTTGTATTGCTTTGGTGGTTTGAATACTGGACGTGCAAATAGTGAAGATTTGCG

Network for GWHGAAEX003801

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08766.10	DEK_C	31	84	6.90E-15
PF02201.17	SWIB	159	231	4.30E-30
PF02201.17	SWIB	275	348	1.30E-27

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-BAF60b

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.610
SRP064423	SRR2545915	Juvenile tuber	7.150
SRP108465	SRR5643513	five period of Gastrodia elata	7.490
	SRR5643514	five period of Gastrodia elata	7.410
	SRR5643515	five period of Gastrodia elata	5.700
	SRR5643524	five period of Gastrodia elata	6.360
	SRR5643525	five period of Gastrodia elata	4.190
	SRR5643528	five period of Gastrodia elata	4.660
	SRR5643658	five period of Gastrodia elata	4.060
	SRR5643659	five period of Gastrodia elata	6.790
	SRR5643660	five period of Gastrodia elata	8.530
	SRR5643661	five period of Gastrodia elata	7.530
	SRR5643662	five period of Gastrodia elata	6.920
	SRR5643663	five period of Gastrodia elata	7.530
	SRR5643664	five period of Gastrodia elata	5.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.740
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.760
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.790
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.590
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.450
SRP279888	Gastro	Gastrodia elata tuber	6.57
	Juven	Juvenile tuber	6.51
	Mother_Gastro	Mother tuber of Gastrodia elata	3.50
	Mother_Juven	Mother tuber of Juvenile	4.76