Detail information of GWHGAAEX003802/evm.TU.scaffold_14.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|258542994|ref|YP_003188427.1| | 3.00E-13 | multicopper oxidase/copper resistance protein CopA [Acetobacter pasteurianus IFO 3283-01] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|698451232|ref|XP_009777142.1| | 0 | PREDICTED: L-ascorbate oxidase homolog [Nicotiana sylvestris] |
| Swissprot | tr|P29162|ASOL_TOBAC | 0 | L-ascorbate oxidase homolog (Precursor) |
| trEMBL | tr|M0TCR0|M0TCR0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P34670_001} |
| TAIR | AT5G66920 | 0 | SKU5 similar 17 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 3179581 | 3186882 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003802
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module3 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 33 | 146 | 4.70E-40 |
| PF00394.21 | Cu-oxidase | 161 | 294 | 2.80E-34 |
| PF07731.13 | Cu-oxidase_2 | 382 | 509 | 2.50E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.210 |
| SRR2545915 | Juvenile tuber | 6.430 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 9.580 |
| SRR5643514 | five period of Gastrodia elata | 3.100 | |
| SRR5643515 | five period of Gastrodia elata | 19.280 | |
| SRR5643524 | five period of Gastrodia elata | 4.060 | |
| SRR5643525 | five period of Gastrodia elata | 17.630 | |
| SRR5643528 | five period of Gastrodia elata | 9.570 | |
| SRR5643658 | five period of Gastrodia elata | 11.840 | |
| SRR5643659 | five period of Gastrodia elata | 17.310 | |
| SRR5643660 | five period of Gastrodia elata | 11.030 | |
| SRR5643661 | five period of Gastrodia elata | 20.100 | |
| SRR5643662 | five period of Gastrodia elata | 22.810 | |
| SRR5643663 | five period of Gastrodia elata | 20.340 | |
| SRR5643664 | five period of Gastrodia elata | 22.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 3.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.850 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.09 |
| Juven | Juvenile tuber | 1.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.98 | |
| Mother_Juven | Mother tuber of Juvenile | 1.12 |