Detail information of GWHGAAEX003805/evm.TU.scaffold_14.117


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG48136.00E-64Translation initiation factor eIF3, p35 subunit
nrgi|586779804|ref|XP_006858618.1|3.09E-84hypothetical protein AMTR_s00066p00018250, partial [Amborella trichopoda]
trEMBLtr|U5DD06|U5DD06_AMBTC1.00E-84Uncharacterized protein {ECO:0000313|EMBL:ERN20085.1} (Fragment)
TAIRAT1G660706.00E-64Translation initiation factor eIF3 subunit

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001234359833445577+
Transcript Sequence

Network for GWHGAAEX003805

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08597.9eIF3_subunit12291.50E-47
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03245EIF3J RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0003743Molecular Functiontranslation initiation factor activity
GO:0005852Cellular Componenteukaryotic translation initiation factor 3 complex
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.350
SRR2545915Juvenile tuber77.850
SRP108465SRR5643513five period of Gastrodia elata60.660
SRR5643514five period of Gastrodia elata47.590
SRR5643515five period of Gastrodia elata53.350
SRR5643524five period of Gastrodia elata57.230
SRR5643525five period of Gastrodia elata68.890
SRR5643528five period of Gastrodia elata73.320
SRR5643658five period of Gastrodia elata48.310
SRR5643659five period of Gastrodia elata66.640
SRR5643660five period of Gastrodia elata63.390
SRR5643661five period of Gastrodia elata70.750
SRR5643662five period of Gastrodia elata61.780
SRR5643663five period of Gastrodia elata66.180
SRR5643664five period of Gastrodia elata54.880
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_153.410
SRR6049655Rhizomagastrodiae_C368-T10_good_140.850
SRR6049656Rhizomagastrodiae_C368-T07_good_155.400
SRR6049657Rhizomagastrodiae_C368-T07_good_144.490
SRR6049658Rhizomagastrodiae_C368-T04_good_138.790
SRR6049659Rhizomagastrodiae_C368-T04_good_136.310
SRR6049660Rhizomagastrodiae_C368-T01_good_140.490
SRR6049661Rhizomagastrodiae_C368-T04_good_143.400
SRR6049662Rhizomagastrodiae_C368-T01_good_160.950
SRR6049663Rhizomagastrodiae_C368-T01_good_144.960
SRR6049664Rhizomagastrodiae_C368-T10_good_175.640
SRR6049665Rhizomagastrodiae_C368-T10_good_175.640
SRP279888GastroGastrodia elata tuber 63.78
JuvenJuvenile tuber53.03
Mother_GastroMother tuber of Gastrodia elata 49.55
Mother_JuvenMother tuber of Juvenile 59.06