Detail information of GWHGAAEX003810/evm.TU.scaffold_14.125


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24980IK cytokine down-regulator of HLA class II
nrgi|743786569|ref|XP_010922207.1|0PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Elaeis guineensis]
Swissprottr|O48713|SMU2_ARATH0Suppressor of mec-8 and unc-52 protein homolog 2
trEMBLtr|M0U5C3|M0U5C3_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP01110_001}
TAIRAT2G264600RED family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001239888754018179-
Transcript Sequence

Network for GWHGAAEX003810

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07808.12RED_N32082.60E-74
PF07807.10RED_C4155211.30E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.870
SRR2545915Juvenile tuber30.940
SRP108465SRR5643513five period of Gastrodia elata13.750
SRR5643514five period of Gastrodia elata14.900
SRR5643515five period of Gastrodia elata15.800
SRR5643524five period of Gastrodia elata15.010
SRR5643525five period of Gastrodia elata12.010
SRR5643528five period of Gastrodia elata10.900
SRR5643658five period of Gastrodia elata16.940
SRR5643659five period of Gastrodia elata16.560
SRR5643660five period of Gastrodia elata19.990
SRR5643661five period of Gastrodia elata14.600
SRR5643662five period of Gastrodia elata15.610
SRR5643663five period of Gastrodia elata15.270
SRR5643664five period of Gastrodia elata15.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.070
SRR6049655Rhizomagastrodiae_C368-T10_good_118.950
SRR6049656Rhizomagastrodiae_C368-T07_good_116.740
SRR6049657Rhizomagastrodiae_C368-T07_good_125.690
SRR6049658Rhizomagastrodiae_C368-T04_good_119.600
SRR6049659Rhizomagastrodiae_C368-T04_good_122.040
SRR6049660Rhizomagastrodiae_C368-T01_good_119.900
SRR6049661Rhizomagastrodiae_C368-T04_good_120.950
SRR6049662Rhizomagastrodiae_C368-T01_good_115.760
SRR6049663Rhizomagastrodiae_C368-T01_good_115.300
SRR6049664Rhizomagastrodiae_C368-T10_good_114.100
SRR6049665Rhizomagastrodiae_C368-T10_good_114.100
SRP279888GastroGastrodia elata tuber 21.68
JuvenJuvenile tuber25.42
Mother_GastroMother tuber of Gastrodia elata 18.26
Mother_JuvenMother tuber of Juvenile 16.79