Detail information of GWHGAAEX003811/evm.TU.scaffold_14.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34283.00E-58Small nuclear ribonucleoprotein SMD1 and related snRNPs
nrgi|586775950|ref|XP_006857628.1|1.87E-69hypothetical protein AMTR_s00061p00127560 [Amborella trichopoda]
Swissprottr|Q43582|LSM4_TOBAC6.00E-09Probable U6 snRNA-associated Sm-like protein LSm4
trEMBLtr|U5DA74|U5DA74_AMBTC7.00E-70Uncharacterized protein {ECO:0000313|EMBL:ERN19095.1}
TAIRAT4G028403.00E-58Small nuclear ribonucleoprotein family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001241094574130955-
Transcript Sequence

Network for GWHGAAEX003811

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01423.21LSM5706.70E-19
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K11087SNRPD1, SMD1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000387Biological Processspliceosomal snRNP assembly

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms164.960
SRR2545915Juvenile tuber163.150
SRP108465SRR5643513five period of Gastrodia elata184.560
SRR5643514five period of Gastrodia elata183.860
SRR5643515five period of Gastrodia elata176.980
SRR5643524five period of Gastrodia elata177.300
SRR5643525five period of Gastrodia elata162.200
SRR5643528five period of Gastrodia elata124.690
SRR5643658five period of Gastrodia elata116.890
SRR5643659five period of Gastrodia elata200.300
SRR5643660five period of Gastrodia elata210.630
SRR5643661five period of Gastrodia elata217.560
SRR5643662five period of Gastrodia elata218.410
SRR5643663five period of Gastrodia elata224.700
SRR5643664five period of Gastrodia elata249.720
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1204.910
SRR6049655Rhizomagastrodiae_C368-T10_good_1133.430
SRR6049656Rhizomagastrodiae_C368-T07_good_1219.000
SRR6049657Rhizomagastrodiae_C368-T07_good_1216.170
SRR6049658Rhizomagastrodiae_C368-T04_good_1230.610
SRR6049659Rhizomagastrodiae_C368-T04_good_1232.590
SRR6049660Rhizomagastrodiae_C368-T01_good_1222.700
SRR6049661Rhizomagastrodiae_C368-T04_good_1213.340
SRR6049662Rhizomagastrodiae_C368-T01_good_1192.030
SRR6049663Rhizomagastrodiae_C368-T01_good_1222.510
SRR6049664Rhizomagastrodiae_C368-T10_good_1207.090
SRR6049665Rhizomagastrodiae_C368-T10_good_1207.090
SRP279888GastroGastrodia elata tuber 258.11
JuvenJuvenile tuber183.74
Mother_GastroMother tuber of Gastrodia elata 96.50
Mother_JuvenMother tuber of Juvenile 90.60