Gene detail

Detail information of GWHGAAEX003814/evm.TU.scaffold_14.133

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1916	Nuclear protein, contains WD40 repeats
nr	gi\|743807210\|ref\|XP_010928032.1\|	PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9LTT8\|VCS_ARATH	Enhancer of mRNA-decapping protein 4
trEMBL	tr\|F6I592\|F6I592_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB62047.1}
TAIR	AT3G13300	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000012	4932984	4977348	-

Transcript Sequence
>GWHTAAEX003814 ATAAATAGAACTATCTTCCTCAACGGAATTCTCGACGCCCTGCACACTCATCTCACTTGCATCTGCGAGATCGTATGCCTGCGATGCTTCGCCGCGGCGCACTATAGTCCGCCGTCATCTGCACGCACCGTTGTCGCCAGGGTTATTGCCGGCATCCCTGCGTATACCGACAACAACGGCGATGTCGTCGCAAAGTGGCAACCCCAATCAATTCGACATGCAGAAGCTCTTCAAACCCCCTAATCTCACTCCCAACCCTGGCACTAACCCTAATTCTAACGCCCCCTTTCTTCCTCCTGCCTCATACGCTGCCGGTGCTTCTCATCTTCCCTATTCGGCGATGCCTTCTCAGGGGACTTTCATCTACCAGCCCACTCCTCCTTTTCATCCCCATCCCTTTATGCACTACCCTCAAGAGATTCTTCACCGGCCCATTATTTCATATCCCGTTCAATCCTCTCACCTTCCAAACCCTAGCTCTAGTCCTAATAGCGCTACACAGAACCCCGGCGCCAGACTCATGGCCCTCCTCGGAAACACCCCTCCAGGTCAGTTCGATTTCACTGCCTCGATGCCTCCGGCTTCTTCATCAGCTGAGCTCCCTGCAATACTCCATGCCGCGCCTTCTGCTCCGCCCACTGTAATGCCGGTTACGCAAGCGCAGCCAACGAGGATACAGAACGCAAAGATGCCTACGGGCTGGCATCTCGGACGAGGGGAACGAGCTGTACACGATGTGGACGCGAGGTTGCCGGGGGAGACACAGCTGCCGCAGCTTGAAGTCACGCCGATAACGAAGTATACGTCGGACCCTGGACTTGTTCTTGGAAGGCAGATCGCCGTTAACAGGACCTACATCTGCTATGGACTTAAGCTTGGCGCAATCAGGGTTCTTAACATCAACACAGCACTGAGATCACTTCTCCGGGGACATTCTCAGAGGGTGACTGATATGGCCTTTTTTGCGGAAGAAGTCCACCTCTTAGCAAGTGTAAGTGTAGATGGGAAGGTTTTTGTATGGAACATTAATGAGGGGCCTGATCATGAAGACAAGCCTCAAATCACAGGAAAACTTGTTCTTGCTATTCAGTTTATTGGAGACAGGGATTATCATCCAAAAATTTGCTGGCACTCTCACAAACAAGAAAAGTTGGTTGTTGGAATTGGTAACAATGTTTTAAGAATTAATATCCCAAAGGTTGTCAGAGGCACAGATTATTCTGCTGATGAACCTCTTAAATGCCCTCTTGAGCAATTGGTTTGTGGAGTGCAATTGGTCGATGGAGTGCAATTGGTGGGCAGACATGATGCAGAAGTGACAGATTTGTCAATACCACAGTGGATGACAACCCGATTTGCTTCAGCATCAAATGATGGAACGGTTAAAATATGGGATGATCATGAGACACTTCCCCTTATGATGTTGAGACCACACGAAGGACAACCAGTTCATTCGGTTTCATTCTTGGCATCCCCCCATCGTCCTGATCACATGGTTCTTCTCACCTCGGGGCCATTGAATCGTGAAGTGAAGTTATGGTCATCCACAGCTGAGGAAGGCTGGTTATTACCCAGTGATTCTGAAACATGGAGGTGCAATCAAACTTTGGAATTAAGAAGTTCAAGGGAACCTCGAGTAGAGGAGGCCTTCTTTAATCAAGTTGTTGTTTTACCCCAAGATTGCCTTATATTACTTGCAAATGCCAAAAAGAATGCTATATATGCTATACATATAGATTATGGACCGTACCCTGCTGCTACCTGCATGGACTATATAGCAGATTTTACTGTTACAATGCCTATTTTGAGTCTTACTGGAACCAGTGACATCTTTCCTGATGGTGAACATGTAGTTCAAGTTTACTGCGTCCAAACACAGGCTATTCAACAATATGCATTGAGTTTGGCACAGTGTTTACCCCCTGCTGTTGATAACCTTTTATTGGCTAAAGATCCTTGCATTTCTCACATTTATGACGGAGTTTCTTCTGAAAAAATTTCCGCATCGGAGCTTTCCCATAGTGGCCTTCATGATATTTCTTCAGCTGGTGTTCTTCCTATACATTCTGTTGGTACAAGCAATTCTGGGAACCCAATTGACCATCATTTAGCTCTGATATCTTCTGAGTCTAACAATATTCCAGATTTACCACCTTCGAGTATTGATATTCAGCCTTCTGCTCCTCCACTCCCAATTATTGAACGTGAAGATTTGCAGTCTACTTCATCCTTAGGCCCTTTAGATTTGGACATCTCTGGGAAATTTTCAGGTTTTCAAAATGCATTAAAAGTTCTTGAACATGGGCAGTCACTTGGGGATCGTGGTGTTTATCTTGGAGTTTCTGGTTATCAAACTGAACGGGGAGAACAGAATACACCTGGAAACAATCCTAATACATCTTTGATGAACGACAGCACTGGAAAGGATAACTTTATAACTGGTCCAAGTGATGGAGCCATGATTCCGAATTCTCAACTAATGGTCAAGTTGGATGAAAAAACTACCCATTTGGTGACTCCATTGGAAATTTTTTCAGGGGTGAAGTCTTTATCTGAAACCAGTTCTGTTAATCAAGGAAGTAATGAAGTCAAGGTTCTAGATCTGGTTGGCAACAATGATTTGCGACATCTAGAGGTAATTAAAGTCGTGGATGTAAGTGTAATGGATCAGTCTGAGGACTTTATTTCTCAAATCAAGGCAAACAATGTTTCTAATCAGGGTTTGAATGAACCATCAAGTTCCCAATCTTCAAATACCCGGAATGACCTACCCAAAGAGGTTGTTGTACGTAGTGCAGGTCTTTATAATGTCAATGAAGTTCAAGTGGGCGATCATGTTACTACACCTGATGTTGTTGAGCAGTTCTCTGTTGAAGAAAAGTTTTTGAAAATCCCAACAGATCTAACAACCGTCTTTCAAAACGAATCTGCATTTGTTGATATTCCTACTTCAAAAACTGCAAATGGAAAGAAGCAAAAAGCAAAGCAGTCTCATGCATCAGGACCATCATCACCATCTGTTAGTCCTTTCAACCCCATTAATTCATCAAATGAACCAGGCTTCAGCATGGGTGTTCTTCCATCAGAGTCTGTTTTTTCCCAATTTTTGTCTATCCAGGACTTGTTAAATCAGATTTTGTCTATGCAAATAGAAATGAATAGGCAGATCAGCACAACAGTGAATGGTCTAATCACAAAAGAGGGGAAGAGAGTTGAAACAGCTTTGTGTCGGAGCATCGAGAAAATTATGAAGGCTAATGCTGATGCCTTGTGGGTTCGTTTTCTTGAAGAAAATGCAAGACGTGACAGAGCTGAAAATGATCATTTGCAACATATTTCAAGCTTGATCACAAATTTTATCAACAAGGACCTGGCTGCTGTTTTGGAAAGGACGCTAAAGAAGGAGATACCATTGATAGGGACAGCAATAACTCGTTCAATCTCACCTGTCATTGAAAAGACTATCTCCTCATCTATTTTTGATTCGTTCCAGAGAGGTGTGGGTGACAAGGCAGTGAACCAGCTGGAAAAGTCTGTTAATTCTAAACTTGATGGAGCTGTTATGAGGCAAATTCAAGCACAGTTCCAGTCAATAGGCAGACAAGTTCTTCAGGATGCACTGCGGTTCAGCTTTGAATCCTCTTTAATTCCAGCATTTGAGAAGTCGTGTAAATTAATGTTTGAACAAGTAGATGCCACTTTCCAGAAGGGAATGGGGGAACATCAGGCCGCCGCACTGCAGCAGTTTGAATCCTCGCATACCCCATTGGCACTTACTTTAAGGGATGCAATTAATTCAGCTTCATCTATCGCCCAAAACTTAACAAGCGAGGTGGCTGAAGGGCAACGCAAGGTCTTAGCCGCCCTTGTATCAGGGAACACAAAGCCCTTGAATCCTATGGCGATGCAGCAAATCAATGGCCTCTTGGGCAGCAGTTTTCCAGAAATGATGGCCCTTTCGGTTCAACAAGTTGAGGCACATCATGATCCCACAAAGGAACTGTCTAGATTGATTTCTGAACAGAAATACGACGAAGCCTTCAACGCGGCTCTTCAGAGGAGCGATGTCGCCATCGTGTCGTGGCTCTGCTCTCAGGTTGATATACGTGGAATGTGTTCAATGGTGCCGCTGCCTCTGAACCAAGGCGTGCTCCTTGCGCTCCTGCAGCAGCTGGCTTGCGACATCAGCAATGACACAGCGAGAAAATTAGCGTGGATGACTGACGTGGCCGCAGCCATCAATCCGTTGGACCCGATTGTCTCCATTCATGTGCAGCCCATTTTTGAGCAGGTCTATGGCATGCTTGCCCACCAGAGGACACTGCCTTCGACCAGCGGATCCGAAGCGTCCAGCATCCGCCTAATAATGCATGTCATAAACTCCGTTTTGATGACTTGTAAGTGAAGTCTTCGCGATCCTCCCATCATATAATTTTATTTGAATATGCAGAAAGTATAGGCAACTTATGCTGTATAGAGCAACTAGGATTTTTAGATGCTAACGCTACCCACAGCTAGTGTATATTAATAGCTGCTAGAGTAATACTTGTGTTATTCATCTCTTAGATTTGTGCTGCATGCAGAATTTTCTTTTTAATTGTCTGGATGAATGTGATTAGTAGAATCAACATGGATTCTTGGCTTTCTTACAAATGCTTTCAAAATTCTTCAAAAGTAGGATTATTTATTTTGATGTATGAAAAGAAGCTTCAACAGTCTTGAAAGTTTTTTTGCAAGTAGCAAATGAACAATGA

Network for GWHGAAEX003814

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16529.4	Ge1_WD40	200	302	2.60E-09
PF00400.31	WD40	375	405	0.17

Protein Sequence

>GWHPAAEX003814
MSSQSGNPNQFDMQKLFKPPNLTPNPGTNPNSNAPFLPPASYAAGASHLPYSAMPSQGTFIYQPTPPFHPHPFMHYPQEILHRPIISYPVQSSHLPNPSSSPNSATQNPGARLMALLGNTPPGQFDFTASMPPASSSAELPAILHAAPSAPPTVMPVTQAQPTRIQNAKMPTGWHLGRGERAVHDVDARLPGETQLPQLEVTPITKYTSDPGLVLGRQIAVNRTYICYGLKLGAIRVLNINTALRSLLRGHSQRVTDMAFFAEEVHLLASVSVDGKVFVWNINEGPDHEDKPQITGKLVLAIQFIGDRDYHPKICWHSHKQEKLVVGIGNNVLRINIPKVVRGTDYSADEPLKCPLEQLVCGVQLVDGVQLVGRHDAEVTDLSIPQWMTTRFASASNDGTVKIWDDHETLPLMMLRPHEGQPVHSVSFLASPHRPDHMVLLTSGPLNREVKLWSSTAEEGWLLPSDSETWRCNQTLELRSSREPRVEEAFFNQVVVLPQDCLILLANAKKNAIYAIHIDYGPYPAATCMDYIADFTVTMPILSLTGTSDIFPDGEHVVQVYCVQTQAIQQYALSLAQCLPPAVDNLLLAKDPCISHIYDGVSSEKISASELSHSGLHDISSAGVLPIHSVGTSNSGNPIDHHLALISSESNNIPDLPPSSIDIQPSAPPLPIIEREDLQSTSSLGPLDLDISGKFSGFQNALKVLEHGQSLGDRGVYLGVSGYQTERGEQNTPGNNPNTSLMNDSTGKDNFITGPSDGAMIPNSQLMVKLDEKTTHLVTPLEIFSGVKSLSETSSVNQGSNEVKVLDLVGNNDLRHLEVIKVVDVSVMDQSEDFISQIKANNVSNQGLNEPSSSQSSNTRNDLPKEVVVRSAGLYNVNEVQVGDHVTTPDVVEQFSVEEKFLKIPTDLTTVFQNESAFVDIPTSKTANGKKQKAKQSHASGPSSPSVSPFNPINSSNEPGFSMGVLPSESVFSQFLSIQDLLNQILSMQIEMNRQISTTVNGLITKEGKRVETALCRSIEKIMKANADALWVRFLEENARRDRAENDHLQHISSLITNFINKDLAAVLERTLKKEIPLIGTAITRSISPVIEKTISSSIFDSFQRGVGDKAVNQLEKSVNSKLDGAVMRQIQAQFQSIGRQVLQDALRFSFESSLIPAFEKSCKLMFEQVDATFQKGMGEHQAAALQQFESSHTPLALTLRDAINSASSIAQNLTSEVAEGQRKVLAALVSGNTKPLNPMAMQQINGLLGSSFPEMMALSVQQVEAHHDPTKELSRLISEQKYDEAFNAALQRSDVAIVSWLCSQVDIRGMCSMVPLPLNQGVLLALLQQLACDISNDTARKLAWMTDVAAAINPLDPIVSIHVQPIFEQVYGMLAHQRTLPSTSGSEASSIRLIMHVINSVLMTCK

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
K12616	EDC4	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.890
SRP064423	SRR2545915	Juvenile tuber	33.810
SRP108465	SRR5643513	five period of Gastrodia elata	30.100
	SRR5643514	five period of Gastrodia elata	33.140
	SRR5643515	five period of Gastrodia elata	30.580
	SRR5643524	five period of Gastrodia elata	33.370
	SRR5643525	five period of Gastrodia elata	30.110
	SRR5643528	five period of Gastrodia elata	26.390
	SRR5643658	five period of Gastrodia elata	32.320
	SRR5643659	five period of Gastrodia elata	30.640
	SRR5643660	five period of Gastrodia elata	35.120
	SRR5643661	five period of Gastrodia elata	31.100
	SRR5643662	five period of Gastrodia elata	31.250
	SRR5643663	five period of Gastrodia elata	32.570
	SRR5643664	five period of Gastrodia elata	35.570
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	27.780
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	31.630
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	30.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.550
SRP279888	Gastro	Gastrodia elata tuber	34.02
	Juven	Juvenile tuber	51.46
	Mother_Gastro	Mother tuber of Gastrodia elata	29.25
	Mother_Juven	Mother tuber of Juvenile	42.72