Detail information of GWHGAAEX003815/evm.TU.scaffold_14.141
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1987 | 2.00E-77 | Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains |
| nr | gi|743807218|ref|XP_010928036.1| | 1.98E-91 | PREDICTED: BTB/POZ domain-containing protein At1g55760 [Elaeis guineensis] |
| Swissprot | tr|Q680K8|Y1576_ARATH | 7.00E-78 | BTB/POZ domain-containing protein At1g55760 |
| trEMBL | tr|A0A097PQ35|A0A097PQ35_YUCFI | 1.00E-89 | BTB/POZ domain-containing protein {ECO:0000313|EMBL:AIU50133.1} (Fragment) |
| TAIR | AT1G55760 | 2.00E-77 | BTB/POZ domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000012 | 5231353 | 5232250 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003815
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.30 | BTB | 29 | 132 | 5.90E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10523 | SPOP | Hedgehog signaling pathway | map04340 |
| Hedgehog signaling pathway - fly | map04341 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.990 |
| SRR2545915 | Juvenile tuber | 15.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.370 |
| SRR5643514 | five period of Gastrodia elata | 2.210 | |
| SRR5643515 | five period of Gastrodia elata | 1.530 | |
| SRR5643524 | five period of Gastrodia elata | 1.640 | |
| SRR5643525 | five period of Gastrodia elata | 0.580 | |
| SRR5643528 | five period of Gastrodia elata | 2.410 | |
| SRR5643658 | five period of Gastrodia elata | 0.840 | |
| SRR5643659 | five period of Gastrodia elata | 6.060 | |
| SRR5643660 | five period of Gastrodia elata | 8.450 | |
| SRR5643661 | five period of Gastrodia elata | 9.540 | |
| SRR5643662 | five period of Gastrodia elata | 8.220 | |
| SRR5643663 | five period of Gastrodia elata | 8.810 | |
| SRR5643664 | five period of Gastrodia elata | 5.740 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 25.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 43.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 35.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.390 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.460 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.64 |
| Juven | Juvenile tuber | 2.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 56.81 | |
| Mother_Juven | Mother tuber of Juvenile | 1.32 |