Detail information of GWHGAAEX003824/evm.TU.scaffold_14.162


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08252.00E-44PHD Zn-finger protein
nrgi|743766698|ref|XP_010913594.1|2.92E-120PREDICTED: uncharacterized protein LOC105039215 [Elaeis guineensis]
Swissprottr|O04251|Y4211_ARATH5.00E-13BRCT domain-containing protein At4g02110
trEMBLtr|K3YH78|K3YH78_SETIT5.00E-105Uncharacterized protein {ECO:0000313|EnsemblPlants:Si013596m}
TAIRAT1G67180_22.00E-44Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001265402466570001+
Transcript Sequence

Network for GWHGAAEX003824

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12738.6PTCB-BRCT1732352.90E-19
PF13639.5zf-RING_24464926.90E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.330
SRR2545915Juvenile tuber20.830
SRP108465SRR5643513five period of Gastrodia elata10.350
SRR5643514five period of Gastrodia elata10.330
SRR5643515five period of Gastrodia elata9.890
SRR5643524five period of Gastrodia elata9.260
SRR5643525five period of Gastrodia elata10.660
SRR5643528five period of Gastrodia elata10.220
SRR5643658five period of Gastrodia elata14.260
SRR5643659five period of Gastrodia elata8.480
SRR5643660five period of Gastrodia elata9.090
SRR5643661five period of Gastrodia elata9.980
SRR5643662five period of Gastrodia elata9.710
SRR5643663five period of Gastrodia elata9.840
SRR5643664five period of Gastrodia elata10.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.900
SRR6049655Rhizomagastrodiae_C368-T10_good_116.640
SRR6049656Rhizomagastrodiae_C368-T07_good_112.210
SRR6049657Rhizomagastrodiae_C368-T07_good_122.310
SRR6049658Rhizomagastrodiae_C368-T04_good_118.800
SRR6049659Rhizomagastrodiae_C368-T04_good_125.710
SRR6049660Rhizomagastrodiae_C368-T01_good_117.860
SRR6049661Rhizomagastrodiae_C368-T04_good_118.780
SRR6049662Rhizomagastrodiae_C368-T01_good_111.770
SRR6049663Rhizomagastrodiae_C368-T01_good_113.680
SRR6049664Rhizomagastrodiae_C368-T10_good_110.500
SRR6049665Rhizomagastrodiae_C368-T10_good_110.500
SRP279888GastroGastrodia elata tuber 16.39
JuvenJuvenile tuber27.71
Mother_GastroMother tuber of Gastrodia elata 18.39
Mother_JuvenMother tuber of Juvenile 30.28